Mercurial > repos > q2d2 > qiime2__phylogeny__filter_table

comparison qiime2__phylogeny__filter_table.xml @ 4:167ee24ffe2f draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:29:55 +0000
parents 2f4e088869d4
children
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3:2f4e088869d4 4:167ee24ffe2f
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.2.1) 9 q2galaxy (version: 2024.5.0)
10 for: 10 for:
11 qiime2 (version: 2024.2.0) 11 qiime2 (version: 2024.5.0)
12 --> 12 -->
13 <tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
14 <description>Remove features from table if they're not present in tree.</description> 14 <description>Remove features from table if they're not present in tree.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version phylogeny</version_command> 18 <version_command>q2galaxy version phylogeny</version_command>
19 <command detect_errors="exit_code">q2galaxy run phylogeny filter_table '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run phylogeny filter_table '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required] Feature table that features should be filtered from."> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required] Feature table that features should be filtered from.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
26 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 27 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
27 <filter type="add_value" value="FeatureTable[Frequency]"/> 28 <filter type="add_value" value="FeatureTable[Frequency]"/>
28 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
29 </options> 29 </options>
30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> 30 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
31 </param> 31 </param>
32 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted | Unrooted]" help="[required] Tree where tip identifiers are the feature identifiers that should be retained in the table."> 32 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted | Unrooted]" help="[required] Tree where tip identifiers are the feature identifiers that should be retained in the table.">
33 <options options_filter_attribute="metadata.semantic_type"> 33 <options options_filter_attribute="metadata.semantic_type">
34 <filter type="add_value" value="Phylogeny[Rooted]"/>
34 <filter type="add_value" value="Phylogeny[Unrooted]"/> 35 <filter type="add_value" value="Phylogeny[Unrooted]"/>
35 <filter type="add_value" value="Phylogeny[Rooted]"/>
36 </options> 36 </options>
37 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator> 37 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator>
38 </param> 38 </param>
39 </inputs> 39 </inputs>
40 <outputs> 40 <outputs>