# HG changeset patch
# User q2d2
# Date 1673650726 0
# Node ID 63f054c1fce23a63bb5593679425cc0f216f94b9
# Parent  fce718a0b52ffde0aa7dde8e809aeb943ae83f8b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 69da7976573cc07a363ac66bdacc9269d7cd3732

diff -r fce718a0b52f -r 63f054c1fce2 qiime2__phylogeny__filter_table.xml
--- a/qiime2__phylogeny__filter_table.xml	Mon Aug 29 20:14:41 2022 +0000
+++ b/qiime2__phylogeny__filter_table.xml	Fri Jan 13 22:58:46 2023 +0000
@@ -1,31 +1,31 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2022, QIIME 2 development team.
+Copyright (c) 2023, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.8.1)
+    q2galaxy (version: 2022.11.1)
 for:
-    qiime2 (version: 2022.8.1)
+    qiime2 (version: 2022.11.1)
 -->
-<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
     <description>Remove features from table if they're not present in tree.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.8</container>
+        <container type="docker">quay.io/qiime2/core:2022.11</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
-    <command detect_errors="aggressive">q2galaxy run phylogeny filter_table '$inputs'</command>
+    <command detect_errors="exit_code">q2galaxy run phylogeny filter_table '$inputs'</command>
     <configfiles>
         <inputs name="inputs" data_style="paths"/>
     </configfiles>
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required]  Feature table that features should be filtered from.">
             <options options_filter_attribute="metadata.semantic_type">
-                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
                 <filter type="add_value" value="FeatureTable[Frequency]"/>
                 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
         </param>
diff -r fce718a0b52f -r 63f054c1fce2 test-data/.gitkeep
diff -r fce718a0b52f -r 63f054c1fce2 test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed