# HG changeset patch
# User q2d2
# Date 1661804081 0
# Node ID fce718a0b52ffde0aa7dde8e809aeb943ae83f8b

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1

diff -r 000000000000 -r fce718a0b52f qiime2__phylogeny__filter_table.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__phylogeny__filter_table.xml	Mon Aug 29 20:14:41 2022 +0000
@@ -0,0 +1,67 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 phylogeny filter-table" id="qiime2__phylogeny__filter_table" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>Remove features from table if they're not present in tree.</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version phylogeny</version_command>
+    <command detect_errors="aggressive">q2galaxy run phylogeny filter_table '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³]" help="[required]  Feature table that features should be filtered from.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
+                <filter type="add_value" value="FeatureTable[Frequency]"/>
+                <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
+        </param>
+        <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted | Unrooted]" help="[required]  Tree where tip identifiers are the feature identifiers that should be retained in the table.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Unrooted]"/>
+                <filter type="add_value" value="Phylogeny[Rooted]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="filtered_table" format="qza" label="${tool.name} on ${on_string}: filtered_table.qza" from_work_dir="filtered_table.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: phylogeny filter-table
+===============================
+Remove features from table if they're not present in tree.
+
+
+Outputs:
+--------
+:filtered_table.qza: The resulting feature table.
+
+|  
+
+Description:
+------------
+Remove features from a feature table if their identifiers are not tip identifiers in tree.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r fce718a0b52f test-data/.gitkeep