# HG changeset patch
# User q2d2
# Date 1762018103 0
# Node ID 5f4032d783ffe83dcfb4bbd9d8244bb8d812007b
# Parent  42b0db80990998ea25fc306296dfb08584663ad6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 42b0db809909 -r 5f4032d783ff qiime2__phylogeny__filter_tree.xml
--- a/qiime2__phylogeny__filter_tree.xml	Tue Jul 15 22:02:52 2025 +0000
+++ b/qiime2__phylogeny__filter_tree.xml	Sat Nov 01 17:28:23 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny filter-tree" id="qiime2__phylogeny__filter_tree" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Remove features from tree based on metadata</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny filter_tree '$inputs'</command>
@@ -26,18 +26,18 @@
     <inputs>
         <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted¹ | Unrooted²]" help="[required]  Tree that should be filtered">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Rooted]"/>
                 <filter type="add_value" value="Phylogeny[Unrooted]"/>
-                <filter type="add_value" value="Phylogeny[Rooted]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]', 'Phylogeny[Unrooted]']</validator>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional]  Feature table which contains the identifier that should be retained in the tree">
                 <options options_filter_attribute="metadata.semantic_type">
-                    <filter type="add_value" value="FeatureTable[Composition]"/>
                     <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
                     <filter type="add_value" value="FeatureTable[Frequency]"/>
                     <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
+                    <filter type="add_value" value="FeatureTable[Composition]"/>
                 </options>
                 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
             </param>
diff -r 42b0db809909 -r 5f4032d783ff test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed