Mercurial > repos > q2d2 > qiime2__phylogeny__iqtree

changeset 2:2f898b3531ee draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 65e4952f33eb335528e8553150e9097e5ea8f556
author q2d2
date Thu, 08 Jun 2023 19:50:01 +0000
parents 931254bf17a4
children f104eefb878b
files qiime2__phylogeny__iqtree.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza
diffstat 2 files changed, 6 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__phylogeny__iqtree.xml	Fri Jan 13 22:58:34 2023 +0000
+++ b/qiime2__phylogeny__iqtree.xml	Thu Jun 08 19:50:01 2023 +0000
@@ -6,14 +6,14 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.11.1)
+    q2galaxy (version: 2023.5.0)
 for:
-    qiime2 (version: 2022.11.1)
+    qiime2 (version: 2023.5.1)
 -->
-<tool name="qiime2 phylogeny iqtree" id="qiime2__phylogeny__iqtree" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 phylogeny iqtree" id="qiime2__phylogeny__iqtree" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
     <description>Construct a phylogenetic tree with IQ-TREE.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.11</container>
+        <container type="docker">quay.io/qiime2/core:2023.5</container>
     </requirements>
     <version_command>q2galaxy version phylogeny</version_command>
     <command detect_errors="exit_code">q2galaxy run phylogeny iqtree '$inputs'</command>
@@ -342,9 +342,9 @@
             <param name="spr_radius" type="integer" min="1" optional="true" label="spr_radius: Int % Range(1, None)" help="[optional]  Radius for parsimony SPR search. If not set, program defaults will be used. See IQ-TREE manual for details."/>
             <param name="allnni" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="allnni: Bool" help="[default: No]  Perform more thorough NNI search."/>
             <param name="fast" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="fast: Bool" help="[default: No]  Fast search to resemble FastTree."/>
-            <param name="alrt" type="integer" min="1000" optional="true" label="alrt: Int % Range(1000, None)" help="[optional]  Single branch test method. Number of bootstrap replicates to perform an SH-like approximate likelihood ratio test (SH-aLRT). Minimum of 1000 replicates is recomended. Can be used with other 'single branch test methods'. Values reported in the order of: alrt, lbp, abayes."/>
+            <param name="alrt" type="integer" min="1000" optional="true" label="alrt: Int % Range(1000, None)" help="[optional]  Single branch test method. Number of bootstrap replicates to perform an SH-like approximate likelihood ratio test (SH-aLRT). Minimum of 1000 replicates is required. Can be used with other 'single branch test methods'. Values reported in the order of: alrt, lbp, abayes."/>
             <param name="abayes" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="abayes: Bool" help="[default: No]  Single branch test method. Approximate Bayes test. Can be used with other 'single branch test methods'. Values reported in the order of: alrt, lbp, abayes."/>
-            <param name="lbp" type="integer" min="1000" optional="true" label="lbp: Int % Range(1000, None)" help="[optional]  Single branch test method. Number of bootstrap replicates to perform a fast local bootstrap probability method. Minimum of 1000 replicates is recomended. Can be used with other 'single branch test methods'. Values reported in the order of: alrt, lbp, abayes."/>
+            <param name="lbp" type="integer" min="1000" optional="true" label="lbp: Int % Range(1000, None)" help="[optional]  Single branch test method. Number of bootstrap replicates to perform a fast local bootstrap probability method. Minimum of 1000 replicates is required. Can be used with other 'single branch test methods'. Values reported in the order of: alrt, lbp, abayes."/>
             <param name="safe" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="safe: Bool" help="[default: No]  Safe likelihood kernel to avoid numerical underflow."/>
         </section>
     </inputs>
Binary file test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza has changed