diff qiime2__phylogeny__midpoint_root.xml @ 0:560fc8042f74 draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 20:15:04 +0000
parents
children 2de661df7aa8
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+++ b/qiime2__phylogeny__midpoint_root.xml	Mon Aug 29 20:15:04 2022 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 phylogeny midpoint-root" id="qiime2__phylogeny__midpoint_root" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>Midpoint root an unrooted phylogenetic tree.</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version phylogeny</version_command>
+    <command detect_errors="aggressive">q2galaxy run phylogeny midpoint_root '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="tree" type="data" format="qza" label="tree: Phylogeny[Unrooted]" help="[required]  The phylogenetic tree to be rooted.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Phylogeny[Unrooted]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Unrooted]']</validator>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="rooted_tree" format="qza" label="${tool.name} on ${on_string}: rooted_tree.qza" from_work_dir="rooted_tree.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: phylogeny midpoint-root
+================================
+Midpoint root an unrooted phylogenetic tree.
+
+
+Outputs:
+--------
+:rooted_tree.qza: The rooted phylogenetic tree.
+
+|  
+
+Description:
+------------
+Midpoint root an unrooted phylogenetic tree.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>