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comparison qiime2__phylogeny__robinson_foulds.xml @ 5:48893627c8f9 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:53:54 +0000
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4:a43f0d5cfd3f 5:48893627c8f9
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 phylogeny robinson-foulds" id="qiime2__phylogeny__robinson_foulds" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Calculate Robinson-Foulds distance between phylogenetic trees.</description> 14 <description>Calculate Robinson-Foulds distance between phylogenetic trees.</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version phylogeny</version_command> 21 <version_command>q2galaxy version phylogeny</version_command>
19 <command detect_errors="exit_code">q2galaxy run phylogeny robinson_foulds '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run phylogeny robinson_foulds '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <param name="trees" type="data" format="qza" label="trees: List[Phylogeny[Rooted | Unrooted]]" help="[required] Phylogenetic trees to compare with Robinson-Foulds. Rooting information and branch lengths are ignored by this metric." multiple="true"> 27 <param name="trees" type="data" format="qza" label="trees: List[Phylogeny[Rooted | Unrooted]]" help="[required] Phylogenetic trees to compare with Robinson-Foulds. Rooting information and branch lengths are ignored by this metric." multiple="true">
25 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="Phylogeny[Unrooted]"/>
26 <filter type="add_value" value="Phylogeny[Rooted]"/> 30 <filter type="add_value" value="Phylogeny[Rooted]"/>
27 <filter type="add_value" value="Phylogeny[Unrooted]"/>
28 </options> 31 </options>
29 </param> 32 </param>
30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 33 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
31 <repeat name="labels" help="[optional] Labels to use for the tree names in the distance matrix. If ommited, labels will be &quot;tree_n&quot; where &quot;n&quot; ranges from 1..N. The number of labels must match the number of trees." title="labels: List[Str]"> 34 <repeat name="labels" help="[optional] Labels to use for the tree names in the distance matrix. If ommited, labels will be &quot;tree_n&quot; where &quot;n&quot; ranges from 1..N. The number of labels must match the number of trees." title="labels: List[Str]">
32 <param name="element" type="text" label="element: Str" help="[required]"> 35 <param name="element" type="text" label="element: Str" help="[required]">