# HG changeset patch
# User q2d2
# Date 1661804492 0
# Node ID 78420e8bfd4914f8b1997fa52d55a39581c397ba

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1

diff -r 000000000000 -r 78420e8bfd49 qiime2__quality_control__bowtie2_build.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__quality_control__bowtie2_build.xml	Mon Aug 29 20:21:32 2022 +0000
@@ -0,0 +1,72 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 quality-control bowtie2-build" id="qiime2__quality_control__bowtie2_build" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>Build bowtie2 index from reference sequences.</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version quality_control</version_command>
+    <command detect_errors="aggressive">q2galaxy run quality_control bowtie2_build '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required]  Reference sequences used to build bowtie2 index.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[Sequence]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="n_threads" type="integer" min="1" value="1" label="n_threads: Int % Range(1, None)" help="[default: 1]  Number of threads to launch"/>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="database" format="qza" label="${tool.name} on ${on_string}: database.qza" from_work_dir="database.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: quality-control bowtie2-build
+======================================
+Build bowtie2 index from reference sequences.
+
+
+Outputs:
+--------
+:database.qza: Bowtie2 index.
+
+|  
+
+Description:
+------------
+Build bowtie2 index from reference sequences.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="bibtex">@article{cite1,
+ author = {Langmead, Ben and Salzberg, Steven L},
+ journal = {Nature methods},
+ number = {4},
+ pages = {357},
+ publisher = {Nature Publishing Group},
+ title = {Fast gapped-read alignment with Bowtie 2},
+ volume = {9},
+ year = {2012}
+}
+</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r 78420e8bfd49 test-data/.gitkeep