Mercurial > repos > q2d2 > qiime2__quality_control__decontam_identify

comparison qiime2__quality_control__decontam_identify.xml @ 2:99bf4ed8cb61 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit c7e80dcda727ce63b42aa8a946e9330310929797
author q2d2
date Mon, 03 Jun 2024 23:30:25 +0000
parents 0036b5f124ef
children 653d55f191df
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1:0036b5f124ef 2:99bf4ed8cb61
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.2.1) 9 q2galaxy (version: 2024.5.0)
10 for: 10 for:
11 qiime2 (version: 2024.2.0) 11 qiime2 (version: 2024.5.0)
12 --> 12 -->
13 <tool name="qiime2 quality-control decontam-identify" id="qiime2__quality_control__decontam_identify" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 quality-control decontam-identify" id="qiime2__quality_control__decontam_identify" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
14 <description>Identify contaminants</description> 14 <description>Identify contaminants</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version quality_control</version_command> 18 <version_command>q2galaxy version quality_control</version_command>
19 <command detect_errors="exit_code">q2galaxy run quality_control decontam_identify '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run quality_control decontam_identify '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] ASV or OTU table which contaminate sequences will be identified from"> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] Feature table which contaminate sequences will be identified from">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[Frequency]"/> 26 <filter type="add_value" value="FeatureTable[Frequency]"/>
27 </options> 27 </options>
28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> 28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
29 </param> 29 </param>
107 Identify contaminants 107 Identify contaminants
108 108
109 109
110 Outputs: 110 Outputs:
111 -------- 111 --------
112 :decontam_scores.qza: The resulting table of scores from the decontam algorithm which scores each ASV or OTU on how likely they are to be a contaminant sequence 112 :decontam_scores.qza: The resulting table of scores from the decontam algorithm which scores each feature on how likely they are to be a contaminant sequence
113 113
114 | 114 |
115 115
116 Description: 116 Description:
117 ------------ 117 ------------