# HG changeset patch
# User q2d2
# Date 1714079942 0
# Node ID 9d29d1b06e2c5c421b432dcf83198375535da59f
# Parent  cf4229cd0a050313b54a154a467e73c8d04ed2e2
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__quality_control commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r cf4229cd0a05 -r 9d29d1b06e2c qiime2__quality_control__exclude_seqs.xml
--- a/qiime2__quality_control__exclude_seqs.xml	Thu Jun 08 19:50:53 2023 +0000
+++ b/qiime2__quality_control__exclude_seqs.xml	Thu Apr 25 21:19:02 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 quality-control exclude-seqs" id="qiime2__quality_control__exclude_seqs" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 quality-control exclude-seqs" id="qiime2__quality_control__exclude_seqs" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Exclude sequences by alignment</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version quality_control</version_command>
     <command detect_errors="exit_code">q2galaxy run quality_control exclude_seqs '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="query_sequences" type="data" format="qza" label="query_sequences: FeatureData[Sequence]" help="[required]  Sequences to test for exclusion">
@@ -42,7 +42,6 @@
             <param name="perc_identity" type="float" min="0.0" max="1.0" value="0.97" label="perc_identity: Float % Range(0.0, 1.0, inclusive_end=True)" help="[default: 0.97]  Reject match if percent identity to reference is lower. Must be in range [0.0, 1.0]"/>
             <param name="evalue" type="float" optional="true" label="evalue: Float" help="[optional]  BLAST expectation (E) value threshold for saving hits. Reject if E value is higher than threshold. This threshold is disabled by default."/>
             <param name="perc_query_aligned" type="float" value="0.97" label="perc_query_aligned: Float" help="[default: 0.97]  Percent of query sequence that must align to reference in order to be accepted as a hit."/>
-            <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1]  Number of jobs to execute. Only applies to vsearch method."/>
             <param name="left_justify" type="select" label="left_justify: Bool % Choices(False)¹ | Bool²" help="[default: No]  Reject match if the pairwise alignment begins with gaps">
                 <option value="__q2galaxy__::literal::False" selected="true">No (Bool)</option>
                 <option value="__q2galaxy__::literal::True">Yes (Bool)</option>