Mercurial > repos > q2d2 > qiime2__rescript__extract_seq_segments
changeset 3:80a749825bfd draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit b1fccfb38b4873cd4699743033449014a2978e7d
| author | q2d2 |
|---|---|
| date | Mon, 05 May 2025 19:03:09 +0000 |
| parents | 8d441435b9e6 |
| children | |
| files | qiime2__rescript__extract_seq_segments.xml |
| diffstat | 1 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/qiime2__rescript__extract_seq_segments.xml Wed Oct 30 19:55:12 2024 +0000 +++ b/qiime2__rescript__extract_seq_segments.xml Mon May 05 19:03:09 2025 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2024, QIIME 2 development team. +Copyright (c) 2025, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.10.0) + q2galaxy (version: 2025.4.0) for: - qiime2 (version: 2024.10.1) + qiime2 (version: 2025.4.0) --> -<tool name="qiime2 rescript extract-seq-segments" id="qiime2__rescript__extract_seq_segments" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 rescript extract-seq-segments" id="qiime2__rescript__extract_seq_segments" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> <description>Use reference sequences to extract shorter matching sequence segments from longer sequences based on a user-defined 'perc-identity' value.</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.10</container> + <container type="docker">quay.io/qiime2/amplicon:2025.4</container> </requirements> <version_command>q2galaxy version rescript</version_command> <command detect_errors="exit_code">q2galaxy run rescript extract_seq_segments '$inputs'</command> @@ -39,7 +39,8 @@ <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="perc_identity" type="float" min="1e-06" max="1" value="0.7" label="perc_identity: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.7] The percent identity at which clustering should be performed. This parameter maps to vsearch's --id parameter."/> <param name="target_coverage" type="float" min="1e-06" max="1" value="0.9" label="target_coverage: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.9] The minimum fraction of coverage that 'reference-segment-sequences' must have in order to extract matching segments from 'input-sequences'."/> - <param name="min_seq_len" type="integer" min="1" optional="true" label="min_seq_len: Int % Range(1, None)" help="[optional] Minimum length of sequence allowed for searching. Any sequence less than this will be discarded. If not set, default program settings will be used."/> + <param name="min_seq_len" type="integer" min="1" value="32" label="min_seq_len: Int % Range(1, None)" help="[default: 32] Minimum length of reference sequence segment allowed for searching. Any sequence less than this will be discarded."/> + <param name="max_seq_len" type="integer" min="1" value="50000" label="max_seq_len: Int % Range(1, None)" help="[default: 50000] Maximum length of reference sequence segment allowed for searching. Any sequence greater than this will be discarded."/> <param name="threads" type="integer" min="1" max="255" value="1" label="threads: Int % Range(1, 256)" help="[default: 1] Number of computation threads to use (1 to 256). The number of threads should be lesser or equal to the number of available CPU cores."/> </section> </inputs>