Mercurial > repos > q2d2 > qiime2__rescript__get_gtdb_data

comparison qiime2__rescript__get_gtdb_data.xml @ 2:54890a41b15d draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:55:02 +0000
parents 27f4edc4dd8d
children
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1:27f4edc4dd8d 2:54890a41b15d
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.5.0) 9 q2galaxy (version: 2024.10.0)
10 for: 10 for:
11 qiime2 (version: 2024.5.0) 11 qiime2 (version: 2024.10.1)
12 --> 12 -->
13 <tool name="qiime2 rescript get-gtdb-data" id="qiime2__rescript__get_gtdb_data" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 rescript get-gtdb-data" id="qiime2__rescript__get_gtdb_data" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Download, parse, and import SSU GTDB reference data.</description> 14 <description>Download, parse, and import SSU GTDB reference data.</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
15 <requirements> 18 <requirements>
16 <container type="docker">quay.io/qiime2/amplicon:2024.5</container> 19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
17 </requirements> 20 </requirements>
18 <version_command>q2galaxy version rescript</version_command> 21 <version_command>q2galaxy version rescript</version_command>
19 <command detect_errors="exit_code">q2galaxy run rescript get_gtdb_data '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run rescript get_gtdb_data '$inputs'</command>
20 <configfiles> 23 <configfiles>
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 25 </configfiles>
23 <inputs> 26 <inputs>
24 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 27 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
25 <param name="version" type="select" label="version: Str % Choices('202.0', '207.0', '214.0', '214.1')" display="radio"> 28 <param name="version" type="select" label="version: Str % Choices('202.0', '207.0', '214.0', '214.1', '220.0')">
26 <option value="202.0">202.0</option> 29 <option value="202.0">202.0</option>
27 <option value="207.0">207.0</option> 30 <option value="207.0">207.0</option>
28 <option value="214.0">214.0</option> 31 <option value="214.0">214.0</option>
29 <option value="214.1" selected="true">214.1</option> 32 <option value="214.1">214.1</option>
33 <option value="220.0" selected="true">220.0</option>
30 </param> 34 </param>
31 <param name="domain" type="select" label="domain: Str % Choices('Both', 'Bacteria', 'Archaea')" display="radio"> 35 <param name="domain" type="select" label="domain: Str % Choices('Both', 'Bacteria', 'Archaea')" display="radio">
32 <option value="Both" selected="true">Both</option> 36 <option value="Both" selected="true">Both</option>
33 <option value="Bacteria">Bacteria</option> 37 <option value="Bacteria">Bacteria</option>
34 <option value="Archaea">Archaea</option> 38 <option value="Archaea">Archaea</option>