Mercurial > repos > q2d2 > qiime2__rescript__get_ncbi_genomes

changeset 4:9d3e45ea0291 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0
author q2d2
date Tue, 15 Jul 2025 22:05:07 +0000
parents 551af48dee76
children
files qiime2__rescript__get_ncbi_genomes.xml
diffstat 1 files changed, 12 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__rescript__get_ncbi_genomes.xml	Mon May 05 19:03:04 2025 +0000
+++ b/qiime2__rescript__get_ncbi_genomes.xml	Tue Jul 15 22:05:07 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.4.0)
+    q2galaxy (version: 2025.7.0)
 for:
-    qiime2 (version: 2025.4.0)
+    qiime2 (version: 2025.7.0)
 -->
-<tool name="qiime2 rescript get-ncbi-genomes" id="qiime2__rescript__get_ncbi_genomes" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 rescript get-ncbi-genomes" id="qiime2__rescript__get_ncbi_genomes" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
     <description>Fetch entire genomes and associated taxonomies and metadata using NCBI Datasets.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
     </requirements>
     <version_command>q2galaxy version rescript</version_command>
     <command detect_errors="exit_code">q2galaxy run rescript get_ncbi_genomes '$inputs'</command>
@@ -24,12 +24,14 @@
         <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
-        <param name="taxon" type="text" label="taxon: Str" help="[required]  NCBI Taxonomy ID or name (common or scientific) at any taxonomic rank.">
-            <sanitizer>
-                <valid initial="string.printable"/>
-            </sanitizer>
-            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
-        </param>
+        <repeat name="taxa" min="1" help="[required]  NCBI Taxonomy IDs or names (common or scientific) at any taxonomic rank." title="taxa: List[Str]">
+            <param name="element" type="text" label="element: Str" help="[required]">
+                <sanitizer>
+                    <valid initial="string.printable"/>
+                </sanitizer>
+                <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
+            </param>
+        </repeat>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="assembly_source" type="select" label="assembly_source: Str % Choices('refseq', 'genbank', 'all')" display="radio">
                 <option value="refseq" selected="true">refseq</option>