Mercurial > repos > q2d2 > qiime2__rescript__orient_seqs

comparison qiime2__rescript__orient_seqs.xml @ 3:0a0b85e1ba3a draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 19:02:53 +0000
parents 2d3f4a0e1ec5
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2:2d3f4a0e1ec5 3:0a0b85e1ba3a
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2024, QIIME 2 development team. 3 Copyright (c) 2025, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.10.0) 9 q2galaxy (version: 2025.4.0)
10 for: 10 for:
11 qiime2 (version: 2024.10.1) 11 qiime2 (version: 2025.4.0)
12 --> 12 -->
13 <tool name="qiime2 rescript orient-seqs" id="qiime2__rescript__orient_seqs" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 rescript orient-seqs" id="qiime2__rescript__orient_seqs" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
14 <description>Orient input sequences by comparison against reference.</description> 14 <description>Orient input sequences by comparison against reference.</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container> 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version rescript</version_command> 21 <version_command>q2galaxy version rescript</version_command>
22 <command detect_errors="exit_code">q2galaxy run rescript orient_seqs '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run rescript orient_seqs '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
35 <options options_filter_attribute="metadata.semantic_type"> 35 <options options_filter_attribute="metadata.semantic_type">
36 <filter type="add_value" value="FeatureData[Sequence]"/> 36 <filter type="add_value" value="FeatureData[Sequence]"/>
37 </options> 37 </options>
38 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator> 38 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator>
39 </param> 39 </param>
40 <param name="threads" type="integer" min="1" max="255" value="1" label="threads: Int % Range(1, 256)" help="[default: 1] Number of computation threads to use (1 to 256). The number of threads should be lesser or equal to the number of available CPU cores."/>
41 <param name="dbmask" type="select" label="dbmask: Str % Choices('none', 'dust', 'soft')" display="radio"> 40 <param name="dbmask" type="select" label="dbmask: Str % Choices('none', 'dust', 'soft')" display="radio">
42 <option value="__q2galaxy__::literal::None" selected="true">None (Use default behavior)</option> 41 <option value="__q2galaxy__::literal::None" selected="true">None (Use default behavior)</option>
43 <option value="none">none</option> 42 <option value="none">none</option>
44 <option value="dust">dust</option> 43 <option value="dust">dust</option>
45 <option value="soft">soft</option> 44 <option value="soft">soft</option>