Mercurial > repos > q2d2 > qiime2__rescript__subsample_fasta

comparison qiime2__rescript__subsample_fasta.xml @ 6:8c0c72637152 draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 36ec48f8c55799a0c963733df13da30f19b1bdf3
author q2d2
date Wed, 28 Jan 2026 16:35:17 +0000
parents 844fa02e0370
children
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5:844fa02e0370 6:8c0c72637152
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2025, QIIME 2 development team. 3 Copyright (c) 2026, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2025.10.0) 9 q2galaxy (version: 2026.1.0)
10 for: 10 for:
11 qiime2 (version: 2025.10.0) 11 qiime2 (version: 2026.1.0)
12 --> 12 -->
13 <tool name="qiime2 rescript subsample-fasta" id="qiime2__rescript__subsample_fasta" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 rescript subsample-fasta" id="qiime2__rescript__subsample_fasta" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
14 <description>Subsample an indicated number of sequences from a FASTA file.</description> 14 <description>Subsample an indicated number of sequences from a FASTA file.</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2025.10</container> 19 <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version rescript</version_command> 21 <version_command>q2galaxy version rescript</version_command>
22 <command detect_errors="exit_code">q2galaxy run rescript subsample_fasta '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run rescript subsample_fasta '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles> 25 </configfiles>
26 <inputs> 26 <inputs>
27 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[AlignedSequence¹ | Sequence²]" help="[required] Sequences to subsample from."> 27 <param name="sequences" type="data" format="qza" label="sequences: FeatureData[AlignedSequence¹ | Sequence²]" help="[required] Sequences to subsample from.">
28 <options options_filter_attribute="metadata.semantic_type"> 28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="FeatureData[AlignedSequence]"/>
29 <filter type="add_value" value="FeatureData[Sequence]"/> 30 <filter type="add_value" value="FeatureData[Sequence]"/>
30 <filter type="add_value" value="FeatureData[AlignedSequence]"/>
31 </options> 31 </options>
32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator> 32 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]', 'FeatureData[Sequence]']</validator>
33 </param> 33 </param>
34 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 34 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
35 <param name="subsample_size" type="float" min="1e-06" max="1" value="0.1" label="subsample_size: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.1] Size of the random sample as a fraction of the total count"/> 35 <param name="subsample_size" type="float" min="1e-06" max="1" value="0.1" label="subsample_size: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[default: 0.1] Size of the random sample as a fraction of the total count"/>