Mercurial > repos > q2d2 > qiime2__sample_classifier__heatmap

annotate qiime2__sample_classifier__heatmap.xml @ 1:c8a9c7b66934 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 23:00:31 +0000
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children 5ceed9008edb
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1 <?xml version='1.0' encoding='utf-8'?>
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2 <!--
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3 Copyright (c) 2023, QIIME 2 development team.
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
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6 -->
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7 <!--
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8 This tool was automatically generated by:
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9 q2galaxy (version: 2022.11.1)
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10 for:
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c8a9c7b66934 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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11 qiime2 (version: 2022.11.1)
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12 -->
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13 <tool name="qiime2 sample-classifier heatmap" id="qiime2__sample_classifier__heatmap" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
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14 <description>Generate heatmap of important features.</description>
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15 <requirements>
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16 <container type="docker">quay.io/qiime2/core:2022.11</container>
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17 </requirements>
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18 <version_command>q2galaxy version sample_classifier</version_command>
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19 <command detect_errors="exit_code">q2galaxy run sample_classifier heatmap '$inputs'</command>
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20 <configfiles>
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21 <inputs name="inputs" data_style="paths"/>
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22 </configfiles>
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23 <inputs>
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24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] Feature table containing all features that should be used for target prediction.">
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25 <options options_filter_attribute="metadata.semantic_type">
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26 <filter type="add_value" value="FeatureTable[Frequency]"/>
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27 </options>
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28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
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29 </param>
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30 <param name="importance" type="data" format="qza" label="importance: FeatureData[Importance]" help="[required] Feature importances.">
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31 <options options_filter_attribute="metadata.semantic_type">
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32 <filter type="add_value" value="FeatureData[Importance]"/>
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33 </options>
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34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Importance]']</validator>
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35 </param>
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36 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
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37 <conditional name="sample_metadata">
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38 <param name="type" type="select" label="sample_metadata: MetadataColumn[Categorical]" help="[optional] Sample metadata column to use for sample labeling or grouping.">
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39 <option value="none" selected="true">None (default)</option>
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40 <option value="tsv">Metadata from TSV</option>
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41 <option value="qza">Metadata from Artifact</option>
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42 </param>
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43 <when value="none"/>
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44 <when value="tsv">
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45 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
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46 <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">
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47 <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator>
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48 </param>
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49 </when>
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50 <when value="qza">
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51 <param name="source" type="data" format="qza" label="Metadata Source"/>
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52 <param name="column" type="text" label="Column Name">
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53 <validator type="empty_field"/>
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54 </param>
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55 </when>
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56 </conditional>
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57 <conditional name="feature_metadata">
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58 <param name="type" type="select" label="feature_metadata: MetadataColumn[Categorical]" help="[optional] Feature metadata (e.g., taxonomy) to use for labeling features in the heatmap.">
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59 <option value="none" selected="true">None (default)</option>
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60 <option value="tsv">Metadata from TSV</option>
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61 <option value="qza">Metadata from Artifact</option>
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62 </param>
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63 <when value="none"/>
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64 <when value="tsv">
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65 <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
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66 <param name="column" type="data_column" label="Column Name" data_ref="source" use_header_names="true">
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67 <validator type="expression" message="The first column cannot be selected (they are IDs).">value != "1"</validator>
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68 </param>
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69 </when>
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70 <when value="qza">
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71 <param name="source" type="data" format="qza" label="Metadata Source"/>
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72 <param name="column" type="text" label="Column Name">
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73 <validator type="empty_field"/>
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74 </param>
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75 </when>
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76 </conditional>
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77 <param name="feature_count" type="integer" min="0" value="50" label="feature_count: Int % Range(0, None)" help="[default: 50] Filter feature table to include top N most important features. Set to zero to include all features."/>
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78 <param name="importance_threshold" type="float" min="0" value="0" label="importance_threshold: Float % Range(0, None)" help="[default: 0] Filter feature table to exclude any features with an importance score less than this threshold. Set to zero to include all features."/>
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79 <param name="group_samples" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="group_samples: Bool" help="[default: No] Group samples by sample metadata."/>
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80 <param name="normalize" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="normalize: Bool" help="[default: Yes] Normalize the feature table by adding a psuedocount of 1 and then taking the log10 of the table."/>
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81 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio">
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82 <option value="error">error</option>
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83 <option value="ignore" selected="true">ignore</option>
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84 </param>
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85 <param name="metric" type="select" label="metric: Str % Choices('braycurtis', 'canberra', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'kulsinski', 'mahalanobis', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')">
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86 <option value="braycurtis" selected="true">braycurtis</option>
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87 <option value="canberra">canberra</option>
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88 <option value="chebyshev">chebyshev</option>
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89 <option value="cityblock">cityblock</option>
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90 <option value="correlation">correlation</option>
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91 <option value="cosine">cosine</option>
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92 <option value="dice">dice</option>
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93 <option value="euclidean">euclidean</option>
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94 <option value="hamming">hamming</option>
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95 <option value="jaccard">jaccard</option>
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96 <option value="kulsinski">kulsinski</option>
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97 <option value="mahalanobis">mahalanobis</option>
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98 <option value="matching">matching</option>
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99 <option value="minkowski">minkowski</option>
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100 <option value="rogerstanimoto">rogerstanimoto</option>
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101 <option value="russellrao">russellrao</option>
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102 <option value="seuclidean">seuclidean</option>
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103 <option value="sokalmichener">sokalmichener</option>
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104 <option value="sokalsneath">sokalsneath</option>
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105 <option value="sqeuclidean">sqeuclidean</option>
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106 <option value="yule">yule</option>
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107 </param>
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108 <param name="method" type="select" label="method: Str % Choices('average', 'centroid', 'complete', 'median', 'single', 'ward', 'weighted')">
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109 <option value="average" selected="true">average</option>
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110 <option value="centroid">centroid</option>
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111 <option value="complete">complete</option>
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112 <option value="median">median</option>
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113 <option value="single">single</option>
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114 <option value="ward">ward</option>
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115 <option value="weighted">weighted</option>
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116 </param>
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117 <param name="cluster" type="select" label="cluster: Str % Choices('both', 'features', 'none', 'samples')" display="radio">
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118 <option value="both">both</option>
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119 <option value="features" selected="true">features</option>
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120 <option value="none">none</option>
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121 <option value="samples">samples</option>
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122 </param>
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123 <param name="color_scheme" type="select" label="color_scheme: Str % Choices('Accent', 'Accent_r', 'Blues', 'Blues_r', 'BrBG', 'BrBG_r', 'BuGn', 'BuGn_r', 'BuPu', 'BuPu_r', 'CMRmap', 'CMRmap_r', 'Dark2', 'Dark2_r', 'GnBu', 'GnBu_r', 'Greens', 'Greens_r', 'Greys', 'Greys_r', 'OrRd', 'OrRd_r', 'Oranges', 'Oranges_r', 'PRGn', 'PRGn_r', 'Paired', 'Paired_r', 'Pastel1', 'Pastel1_r', 'Pastel2', 'Pastel2_r', 'PiYG', 'PiYG_r', 'PuBu', 'PuBuGn', 'PuBuGn_r', 'PuBu_r', 'PuOr', 'PuOr_r', 'PuRd', 'PuRd_r', 'Purples', 'Purples_r', 'RdBu', 'RdBu_r', 'RdGy', 'RdGy_r', 'RdPu', 'RdPu_r', 'RdYlBu', 'RdYlBu_r', 'RdYlGn', 'RdYlGn_r', 'Reds', 'Reds_r', 'Set1', 'Set1_r', 'Set2', 'Set2_r', 'Set3', 'Set3_r', 'Spectral', 'Spectral_r', 'Vega10', 'Vega10_r', 'Vega20', 'Vega20_r', 'Vega20b', 'Vega20b_r', 'Vega20c', 'Vega20c_r', 'Wistia', 'Wistia_r', 'YlGn', 'YlGnBu', 'YlGnBu_r', 'YlGn_r', 'YlOrBr', 'YlOrBr_r', 'YlOrRd', 'YlOrRd_r', 'afmhot', 'afmhot_r', 'autumn', 'autumn_r', 'binary', 'binary_r', 'bone', 'bone_r', 'brg', 'brg_r', 'bwr', 'bwr_r', 'cividis', 'cividis_r', 'cool', 'cool_r', 'coolwarm', 'coolwarm_r', 'copper', 'copper_r', 'cubehelix', 'cubehelix_r', 'flag', 'flag_r', 'gist_earth', 'gist_earth_r', 'gist_gray', 'gist_gray_r', 'gist_heat', 'gist_heat_r', 'gist_ncar', 'gist_ncar_r', 'gist_rainbow', 'gist_rainbow_r', 'gist_stern', 'gist_stern_r', 'gist_yarg', 'gist_yarg_r', 'gnuplot', 'gnuplot2', 'gnuplot2_r', 'gnuplot_r', 'gray', 'gray_r', 'hot', 'hot_r', 'hsv', 'hsv_r', 'icefire', 'icefire_r', 'inferno', 'inferno_r', 'jet', 'jet_r', 'magma', 'magma_r', 'mako', 'mako_r', 'nipy_spectral', 'nipy_spectral_r', 'ocean', 'ocean_r', 'pink', 'pink_r', 'plasma', 'plasma_r', 'prism', 'prism_r', 'rainbow', 'rainbow_r', 'rocket', 'rocket_r', 'seismic', 'seismic_r', 'spectral', 'spectral_r', 'spring', 'spring_r', 'summer', 'summer_r', 'tab10', 'tab10_r', 'tab20', 'tab20_r', 'tab20b', 'tab20b_r', 'tab20c', 'tab20c_r', 'terrain', 'terrain_r', 'viridis', 'viridis_r', 'vlag', 'vlag_r', 'winter', 'winter_r')">
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124 <option value="Accent">Accent</option>
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125 <option value="Accent_r">Accent_r</option>
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126 <option value="Blues">Blues</option>
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127 <option value="Blues_r">Blues_r</option>
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128 <option value="BrBG">BrBG</option>
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129 <option value="BrBG_r">BrBG_r</option>
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130 <option value="BuGn">BuGn</option>
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131 <option value="BuGn_r">BuGn_r</option>
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132 <option value="BuPu">BuPu</option>
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133 <option value="BuPu_r">BuPu_r</option>
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134 <option value="CMRmap">CMRmap</option>
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135 <option value="CMRmap_r">CMRmap_r</option>
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136 <option value="Dark2">Dark2</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
137 <option value="Dark2_r">Dark2_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
138 <option value="GnBu">GnBu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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139 <option value="GnBu_r">GnBu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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140 <option value="Greens">Greens</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
141 <option value="Greens_r">Greens_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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142 <option value="Greys">Greys</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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143 <option value="Greys_r">Greys_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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144 <option value="OrRd">OrRd</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
145 <option value="OrRd_r">OrRd_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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146 <option value="Oranges">Oranges</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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147 <option value="Oranges_r">Oranges_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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148 <option value="PRGn">PRGn</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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149 <option value="PRGn_r">PRGn_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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150 <option value="Paired">Paired</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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151 <option value="Paired_r">Paired_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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152 <option value="Pastel1">Pastel1</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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153 <option value="Pastel1_r">Pastel1_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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154 <option value="Pastel2">Pastel2</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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155 <option value="Pastel2_r">Pastel2_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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156 <option value="PiYG">PiYG</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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157 <option value="PiYG_r">PiYG_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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158 <option value="PuBu">PuBu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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159 <option value="PuBuGn">PuBuGn</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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160 <option value="PuBuGn_r">PuBuGn_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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161 <option value="PuBu_r">PuBu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
162 <option value="PuOr">PuOr</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
163 <option value="PuOr_r">PuOr_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
164 <option value="PuRd">PuRd</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
165 <option value="PuRd_r">PuRd_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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166 <option value="Purples">Purples</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
167 <option value="Purples_r">Purples_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
168 <option value="RdBu">RdBu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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169 <option value="RdBu_r">RdBu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
170 <option value="RdGy">RdGy</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
171 <option value="RdGy_r">RdGy_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
172 <option value="RdPu">RdPu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
173 <option value="RdPu_r">RdPu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
174 <option value="RdYlBu">RdYlBu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
175 <option value="RdYlBu_r">RdYlBu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
176 <option value="RdYlGn">RdYlGn</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
177 <option value="RdYlGn_r">RdYlGn_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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178 <option value="Reds">Reds</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
179 <option value="Reds_r">Reds_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
180 <option value="Set1">Set1</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
181 <option value="Set1_r">Set1_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
182 <option value="Set2">Set2</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
183 <option value="Set2_r">Set2_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
184 <option value="Set3">Set3</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
185 <option value="Set3_r">Set3_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
186 <option value="Spectral">Spectral</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
187 <option value="Spectral_r">Spectral_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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188 <option value="Vega10">Vega10</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
189 <option value="Vega10_r">Vega10_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
190 <option value="Vega20">Vega20</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
191 <option value="Vega20_r">Vega20_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
192 <option value="Vega20b">Vega20b</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
193 <option value="Vega20b_r">Vega20b_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
194 <option value="Vega20c">Vega20c</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
195 <option value="Vega20c_r">Vega20c_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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196 <option value="Wistia">Wistia</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
197 <option value="Wistia_r">Wistia_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
198 <option value="YlGn">YlGn</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
199 <option value="YlGnBu">YlGnBu</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
200 <option value="YlGnBu_r">YlGnBu_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
201 <option value="YlGn_r">YlGn_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
202 <option value="YlOrBr">YlOrBr</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
203 <option value="YlOrBr_r">YlOrBr_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
204 <option value="YlOrRd">YlOrRd</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
205 <option value="YlOrRd_r">YlOrRd_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
206 <option value="afmhot">afmhot</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
207 <option value="afmhot_r">afmhot_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
208 <option value="autumn">autumn</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff changeset
209 <option value="autumn_r">autumn_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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210 <option value="binary">binary</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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211 <option value="binary_r">binary_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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212 <option value="bone">bone</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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213 <option value="bone_r">bone_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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214 <option value="brg">brg</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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215 <option value="brg_r">brg_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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216 <option value="bwr">bwr</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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217 <option value="bwr_r">bwr_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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218 <option value="cividis">cividis</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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219 <option value="cividis_r">cividis_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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220 <option value="cool">cool</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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221 <option value="cool_r">cool_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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222 <option value="coolwarm">coolwarm</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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223 <option value="coolwarm_r">coolwarm_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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224 <option value="copper">copper</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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225 <option value="copper_r">copper_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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226 <option value="cubehelix">cubehelix</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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227 <option value="cubehelix_r">cubehelix_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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228 <option value="flag">flag</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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229 <option value="flag_r">flag_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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230 <option value="gist_earth">gist_earth</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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231 <option value="gist_earth_r">gist_earth_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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232 <option value="gist_gray">gist_gray</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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233 <option value="gist_gray_r">gist_gray_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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234 <option value="gist_heat">gist_heat</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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235 <option value="gist_heat_r">gist_heat_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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236 <option value="gist_ncar">gist_ncar</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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237 <option value="gist_ncar_r">gist_ncar_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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238 <option value="gist_rainbow">gist_rainbow</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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239 <option value="gist_rainbow_r">gist_rainbow_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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240 <option value="gist_stern">gist_stern</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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241 <option value="gist_stern_r">gist_stern_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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242 <option value="gist_yarg">gist_yarg</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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243 <option value="gist_yarg_r">gist_yarg_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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244 <option value="gnuplot">gnuplot</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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245 <option value="gnuplot2">gnuplot2</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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246 <option value="gnuplot2_r">gnuplot2_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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247 <option value="gnuplot_r">gnuplot_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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248 <option value="gray">gray</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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249 <option value="gray_r">gray_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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250 <option value="hot">hot</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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251 <option value="hot_r">hot_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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252 <option value="hsv">hsv</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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253 <option value="hsv_r">hsv_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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254 <option value="icefire">icefire</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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255 <option value="icefire_r">icefire_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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256 <option value="inferno">inferno</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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257 <option value="inferno_r">inferno_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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258 <option value="jet">jet</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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259 <option value="jet_r">jet_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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260 <option value="magma">magma</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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261 <option value="magma_r">magma_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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262 <option value="mako">mako</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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263 <option value="mako_r">mako_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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264 <option value="nipy_spectral">nipy_spectral</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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265 <option value="nipy_spectral_r">nipy_spectral_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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266 <option value="ocean">ocean</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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267 <option value="ocean_r">ocean_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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268 <option value="pink">pink</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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269 <option value="pink_r">pink_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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270 <option value="plasma">plasma</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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271 <option value="plasma_r">plasma_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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272 <option value="prism">prism</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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273 <option value="prism_r">prism_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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274 <option value="rainbow">rainbow</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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275 <option value="rainbow_r">rainbow_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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276 <option value="rocket" selected="true">rocket</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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277 <option value="rocket_r">rocket_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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278 <option value="seismic">seismic</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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279 <option value="seismic_r">seismic_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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280 <option value="spectral">spectral</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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281 <option value="spectral_r">spectral_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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282 <option value="spring">spring</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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283 <option value="spring_r">spring_r</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
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284 <option value="summer">summer</option>
9d749a1b0f69 planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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285 <option value="summer_r">summer_r</option>
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286 <option value="tab10">tab10</option>
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287 <option value="tab10_r">tab10_r</option>
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288 <option value="tab20">tab20</option>
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289 <option value="tab20_r">tab20_r</option>
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290 <option value="tab20b">tab20b</option>
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291 <option value="tab20b_r">tab20b_r</option>
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292 <option value="tab20c">tab20c</option>
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293 <option value="tab20c_r">tab20c_r</option>
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294 <option value="terrain">terrain</option>
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295 <option value="terrain_r">terrain_r</option>
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296 <option value="viridis">viridis</option>
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297 <option value="viridis_r">viridis_r</option>
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298 <option value="vlag">vlag</option>
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299 <option value="vlag_r">vlag_r</option>
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300 <option value="winter">winter</option>
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301 <option value="winter_r">winter_r</option>
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302 </param>
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303 </section>
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304 </inputs>
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305 <outputs>
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306 <data name="heatmap" format="qzv" label="${tool.name} on ${on_string}: heatmap.qzv" from_work_dir="heatmap.qzv"/>
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307 <data name="filtered_table" format="qza" label="${tool.name} on ${on_string}: filtered_table.qza" from_work_dir="filtered_table.qza"/>
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308 </outputs>
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309 <tests/>
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310 <help>
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311 QIIME 2: sample-classifier heatmap
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312 ==================================
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313 Generate heatmap of important features.
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314
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315
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316 Outputs:
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317 --------
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318 :heatmap.qzv: Heatmap of important features.
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319 :filtered_table.qza: Filtered feature table containing data displayed in heatmap.
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320
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321 |
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322
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323 Description:
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324 ------------
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325 Generate a heatmap of important features. Features are filtered based on importance scores; samples are optionally grouped by sample metadata; and a heatmap is generated that displays (normalized) feature abundances per sample.
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326
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327
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328 |
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329
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330 </help>
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331 <citations>
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332 <citation type="doi">10.21105/joss.00934</citation>
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333 <citation type="bibtex">@article{cite2,
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334 author = {Pedregosa, Fabian and Varoquaux, Gaël and Gramfort, Alexandre and Michel, Vincent and Thirion, Bertrand and Grisel, Olivier and Blondel, Mathieu and Prettenhofer, Peter and Weiss, Ron and Dubourg, Vincent and Vanderplas, Jake and Passos, Alexandre and Cournapeau, David and Brucher, Matthieu and Perrot, Matthieu and Duchesnay, Édouard},
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335 journal = {Journal of machine learning research},
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336 number = {Oct},
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337 pages = {2825--2830},
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338 title = {Scikit-learn: Machine learning in Python},
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339 volume = {12},
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340 year = {2011}
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341 }
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342 </citation>
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343 <citation type="doi">10.1038/s41587-019-0209-9</citation>
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344 </citations>
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345 </tool>