Mercurial > repos > q2d2 > qiime2__sample_classifier__metatable

comparison qiime2__sample_classifier__metatable.xml @ 3:115e5387e46a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:26:56 +0000
parents 30cdc8cb01d0
children ac49a2a49935
comparison
equal deleted inserted replaced
2:30cdc8cb01d0 3:115e5387e46a
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description> 14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version sample_classifier</version_command> 18 <version_command>q2galaxy version sample_classifier</version_command>
19 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <repeat name="metadata" min="1" help="[required] Metadata file to convert to feature table." title="metadata: Metadata"> 24 <repeat name="metadata" min="1" help="[required] Metadata file to convert to feature table." title="metadata: Metadata">
25 <conditional name="__q2galaxy__GUI__conditional__metadata__"> 25 <conditional name="__q2galaxy__GUI__conditional__metadata__">
26 <param name="type" type="select" label="metadata: Metadata"> 26 <param name="type" type="select" label="metadata: Metadata">
34 <param name="source" type="data" format="qza" label="Metadata Source"/> 34 <param name="source" type="data" format="qza" label="Metadata Source"/>
35 </when> 35 </when>
36 </conditional> 36 </conditional>
37 </repeat> 37 </repeat>
38 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 38 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
39 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency]" help="[optional] Feature table containing all features that should be used for target prediction."> 39 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction.">
40 <options options_filter_attribute="metadata.semantic_type"> 40 <options options_filter_attribute="metadata.semantic_type">
41 <filter type="add_value" value="FeatureTable[Composition]"/>
41 <filter type="add_value" value="FeatureTable[Frequency]"/> 42 <filter type="add_value" value="FeatureTable[Frequency]"/>
43 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
44 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
42 </options> 45 </options>
43 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> 46 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
44 </param> 47 </param>
45 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio"> 48 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio">
46 <option value="error">error</option> 49 <option value="error">error</option>
47 <option value="ignore" selected="true">ignore</option> 50 <option value="ignore" selected="true">ignore</option>
48 </param> 51 </param>