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comparison qiime2__sample_classifier__metatable.xml @ 6:63930077c13a draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit b1fccfb38b4873cd4699743033449014a2978e7d
author q2d2
date Mon, 05 May 2025 19:03:22 +0000
parents 905113a20ca7
children
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5:905113a20ca7 6:63930077c13a
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2024, QIIME 2 development team. 3 Copyright (c) 2025, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2024.10.0) 9 q2galaxy (version: 2025.4.0)
10 for: 10 for:
11 qiime2 (version: 2024.10.1) 11 qiime2 (version: 2025.4.0)
12 --> 12 -->
13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description> 14 <description>Convert (and merge) positive numeric metadata (in)to feature table.</description>
15 <xrefs> 15 <xrefs>
16 <xref type="bio.tools">qiime2</xref> 16 <xref type="bio.tools">qiime2</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container> 19 <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
20 </requirements> 20 </requirements>
21 <version_command>q2galaxy version sample_classifier</version_command> 21 <version_command>q2galaxy version sample_classifier</version_command>
22 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command> 22 <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command>
23 <configfiles> 23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/> 24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
39 </conditional> 39 </conditional>
40 </repeat> 40 </repeat>
41 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> 41 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
42 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction."> 42 <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction.">
43 <options options_filter_attribute="metadata.semantic_type"> 43 <options options_filter_attribute="metadata.semantic_type">
44 <filter type="add_value" value="FeatureTable[Composition]"/>
44 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> 45 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
45 <filter type="add_value" value="FeatureTable[Frequency]"/> 46 <filter type="add_value" value="FeatureTable[Frequency]"/>
46 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> 47 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
47 <filter type="add_value" value="FeatureTable[Composition]"/>
48 </options> 48 </options>
49 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> 49 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
50 </param> 50 </param>
51 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio"> 51 <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio">
52 <option value="error">error</option> 52 <option value="error">error</option>