Mercurial > repos > q2d2 > qiime2__sample_classifier__metatable
changeset 3:115e5387e46a draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:26:56 +0000 |
| parents | 30cdc8cb01d0 |
| children | ac49a2a49935 |
| files | qiime2__sample_classifier__metatable.xml |
| diffstat | 1 files changed, 11 insertions(+), 8 deletions(-) [+] |
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--- a/qiime2__sample_classifier__metatable.xml Thu Jun 08 19:52:23 2023 +0000 +++ b/qiime2__sample_classifier__metatable.xml Thu Apr 25 21:26:56 2024 +0000 @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Convert (and merge) positive numeric metadata (in)to feature table.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version sample_classifier</version_command> <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <repeat name="metadata" min="1" help="[required] Metadata file to convert to feature table." title="metadata: Metadata"> @@ -36,11 +36,14 @@ </conditional> </repeat> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> - <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency]" help="[optional] Feature table containing all features that should be used for target prediction."> + <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional] Feature table containing all features that should be used for target prediction."> <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="FeatureTable[Composition]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> + <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> + <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> </options> - <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param> <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio"> <option value="error">error</option>