Mercurial > repos > q2d2 > qiime2__sample_classifier__predict_regression

comparison qiime2__sample_classifier__predict_regression.xml @ 3:8281a7dc5248 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:26:26 +0000
parents f7c33b0adf29
children 6e134166916b
comparison
equal deleted inserted replaced
2:f7c33b0adf29 3:8281a7dc5248
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 sample-classifier predict-regression" id="qiime2__sample_classifier__predict_regression" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 sample-classifier predict-regression" id="qiime2__sample_classifier__predict_regression" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Use trained regressor to predict target values for new samples.</description> 14 <description>Use trained regressor to predict target values for new samples.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version sample_classifier</version_command> 18 <version_command>q2galaxy version sample_classifier</version_command>
19 <command detect_errors="exit_code">q2galaxy run sample_classifier predict_regression '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run sample_classifier predict_regression '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] Feature table containing all features that should be used for target prediction."> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[required] Feature table containing all features that should be used for target prediction.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[Composition]"/>
26 <filter type="add_value" value="FeatureTable[Frequency]"/> 27 <filter type="add_value" value="FeatureTable[Frequency]"/>
28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
29 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
27 </options> 30 </options>
28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> 31 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
29 </param> 32 </param>
30 <param name="sample_estimator" type="data" format="qza" label="sample_estimator: SampleEstimator[Regressor]" help="[required] Sample regressor trained with fit_regressor."> 33 <param name="sample_estimator" type="data" format="qza" label="sample_estimator: SampleEstimator[Regressor]" help="[required] Sample regressor trained with fit_regressor.">
31 <options options_filter_attribute="metadata.semantic_type"> 34 <options options_filter_attribute="metadata.semantic_type">
32 <filter type="add_value" value="SampleEstimator[Regressor]"/> 35 <filter type="add_value" value="SampleEstimator[Regressor]"/>
33 </options> 36 </options>
34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleEstimator[Regressor]']</validator> 37 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleEstimator[Regressor]']</validator>
35 </param> 38 </param>
36 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
37 <param name="n_jobs" type="integer" value="1" label="n_jobs: Int" help="[default: 1] Number of jobs to run in parallel."/>
38 </section>
39 </inputs> 39 </inputs>
40 <outputs> 40 <outputs>
41 <data name="predictions" format="qza" label="${tool.name} on ${on_string}: predictions.qza" from_work_dir="predictions.qza"/> 41 <data name="predictions" format="qza" label="${tool.name} on ${on_string}: predictions.qza" from_work_dir="predictions.qza"/>
42 </outputs> 42 </outputs>
43 <tests/> 43 <tests/>