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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author q2d2
date Thu, 25 Apr 2024 21:26:46 +0000
parents a80604576ca2
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2:a80604576ca2 3:decd505fbc3d
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <!-- 2 <!--
3 Copyright (c) 2023, QIIME 2 development team. 3 Copyright (c) 2024, QIIME 2 development team.
4 4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 --> 6 -->
7 <!-- 7 <!--
8 This tool was automatically generated by: 8 This tool was automatically generated by:
9 q2galaxy (version: 2023.5.0) 9 q2galaxy (version: 2024.2.1)
10 for: 10 for:
11 qiime2 (version: 2023.5.1) 11 qiime2 (version: 2024.2.0)
12 --> 12 -->
13 <tool name="qiime2 sample-classifier split-table" id="qiime2__sample_classifier__split_table" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> 13 <tool name="qiime2 sample-classifier split-table" id="qiime2__sample_classifier__split_table" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
14 <description>Split a feature table into training and testing sets.</description> 14 <description>Split a feature table into training and testing sets.</description>
15 <requirements> 15 <requirements>
16 <container type="docker">quay.io/qiime2/core:2023.5</container> 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
17 </requirements> 17 </requirements>
18 <version_command>q2galaxy version sample_classifier</version_command> 18 <version_command>q2galaxy version sample_classifier</version_command>
19 <command detect_errors="exit_code">q2galaxy run sample_classifier split_table '$inputs'</command> 19 <command detect_errors="exit_code">q2galaxy run sample_classifier split_table '$inputs'</command>
20 <configfiles> 20 <configfiles>
21 <inputs name="inputs" data_style="paths"/> 21 <inputs name="inputs" data_style="staging_path_and_source_path"/>
22 </configfiles> 22 </configfiles>
23 <inputs> 23 <inputs>
24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Balance⁴ | PercentileNormalized⁵ | Design⁶]" help="[required] Feature table containing all features that should be used for target prediction."> 24 <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | RelativeFrequency² | PresenceAbsence³ | Balance⁴ | PercentileNormalized⁵ | Design⁶ | Composition⁷]" help="[required] Feature table containing all features that should be used for target prediction.">
25 <options options_filter_attribute="metadata.semantic_type"> 25 <options options_filter_attribute="metadata.semantic_type">
26 <filter type="add_value" value="FeatureTable[PercentileNormalized]"/>
27 <filter type="add_value" value="FeatureTable[Frequency]"/>
28 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
26 <filter type="add_value" value="FeatureTable[Balance]"/> 29 <filter type="add_value" value="FeatureTable[Balance]"/>
27 <filter type="add_value" value="FeatureTable[PercentileNormalized]"/> 30 <filter type="add_value" value="FeatureTable[Composition]"/>
28 <filter type="add_value" value="FeatureTable[Design]"/> 31 <filter type="add_value" value="FeatureTable[Design]"/>
29 <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
30 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> 32 <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
31 <filter type="add_value" value="FeatureTable[Frequency]"/>
32 </options> 33 </options>
33 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Balance]', 'FeatureTable[Design]', 'FeatureTable[Frequency]', 'FeatureTable[PercentileNormalized]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> 34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Balance]', 'FeatureTable[Composition]', 'FeatureTable[Design]', 'FeatureTable[Frequency]', 'FeatureTable[PercentileNormalized]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
34 </param> 35 </param>
35 <conditional name="metadata"> 36 <conditional name="metadata">
36 <param name="type" type="select" label="metadata: MetadataColumn[Numeric | Categorical]" help="[required] Numeric metadata column to use as prediction target."> 37 <param name="type" type="select" label="metadata: MetadataColumn[Numeric | Categorical]" help="[required] Numeric metadata column to use as prediction target.">
37 <option value="tsv" selected="true">Metadata from TSV</option> 38 <option value="tsv" selected="true">Metadata from TSV</option>
38 <option value="qza">Metadata from Artifact</option> 39 <option value="qza">Metadata from Artifact</option>