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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:58:01 +0000
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1 <?xml version='1.0' encoding='utf-8'?>
2 <!--
3 Copyright (c) 2024, QIIME 2 development team.
4
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
6 -->
7 <!--
8 This tool was automatically generated by:
9 q2galaxy (version: 2024.10.0)
10 for:
11 qiime2 (version: 2024.10.1)
12 -->
13 <tool name="qiime2 stats plot-rainclouds" id="qiime2__stats__plot_rainclouds" version="0+unknown-q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
14 <description>Raincloud plots</description>
15 <xrefs>
16 <xref type="bio.tools">qiime2</xref>
17 </xrefs>
18 <requirements>
19 <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
20 </requirements>
21 <version_command>q2galaxy version stats</version_command>
22 <command detect_errors="exit_code">q2galaxy run stats plot_rainclouds '$inputs'</command>
23 <configfiles>
24 <inputs name="inputs" data_style="staging_path_and_source_path"/>
25 </configfiles>
26 <inputs>
27 <param name="data" type="data" format="qza" label="data: Dist1D[Multi | Ordered | Unordered | NestedOrdered | NestedUnordered, Matched | Independent]" help="[required] The group distributions to plot.">
28 <options options_filter_attribute="metadata.semantic_type">
29 <filter type="add_value" value="Dist1D[NestedOrdered, Matched]"/>
30 <filter type="add_value" value="Dist1D[Ordered, Matched]"/>
31 <filter type="add_value" value="Dist1D[Ordered, Independent]"/>
32 <filter type="add_value" value="Dist1D[Multi, Independent]"/>
33 <filter type="add_value" value="Dist1D[NestedOrdered, Independent]"/>
34 <filter type="add_value" value="Dist1D[Multi, Matched]"/>
35 <filter type="add_value" value="Dist1D[Unordered, Matched]"/>
36 <filter type="add_value" value="Dist1D[Unordered, Independent]"/>
37 <filter type="add_value" value="Dist1D[NestedUnordered, Matched]"/>
38 <filter type="add_value" value="Dist1D[NestedUnordered, Independent]"/>
39 </options>
40 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Dist1D[Multi, Independent]', 'Dist1D[Multi, Matched]', 'Dist1D[NestedOrdered, Independent]', 'Dist1D[NestedOrdered, Matched]', 'Dist1D[NestedUnordered, Independent]', 'Dist1D[NestedUnordered, Matched]', 'Dist1D[Ordered, Independent]', 'Dist1D[Ordered, Matched]', 'Dist1D[Unordered, Independent]', 'Dist1D[Unordered, Matched]']</validator>
41 </param>
42 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
43 <param name="stats" type="data" format="qza" optional="true" label="stats: StatsTable[Pairwise]" help="[optional] Statistical tests to display.">
44 <options options_filter_attribute="metadata.semantic_type">
45 <filter type="add_value" value="StatsTable[Pairwise]"/>
46 </options>
47 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['StatsTable[Pairwise]']</validator>
48 </param>
49 </section>
50 </inputs>
51 <outputs>
52 <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
53 </outputs>
54 <tests>
55 <test>
56 <param name="data" value="plot_rainclouds.test0.dist.qza" ftype="qza"/>
57 <output name="visualization" ftype="qzv">
58 <assert_contents>
59 <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
60 <has_line_matching expression="type: Visualization"/>
61 </has_archive_member>
62 </assert_contents>
63 </output>
64 </test>
65 </tests>
66 <help>
67 QIIME 2: stats plot-rainclouds
68 ==============================
69 Raincloud plots
70
71
72 Outputs:
73 --------
74 :visualization.qzv: &lt;no description&gt;
75
76 |
77
78 Description:
79 ------------
80 Plot raincloud distributions for each group.
81
82 Examples:
83 ---------
84
85 plot_rainclouds
86 ***************
87 Using the ``qiime2 stats plot-rainclouds`` tool:
88 #. Set *"data"* to ``#: dist.qza``
89 #. Press the ``Execute`` button.
90
91 Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
92 (Renaming is optional, but it will make any subsequent steps easier to complete.)
93
94 .. list-table::
95 :align: left
96 :header-rows: 1
97
98 * - History Name
99 - *"Name"* to set (be sure to press ``Save``)
100 * - ``#: qiime2 stats plot-rainclouds [...] : visualization.qzv``
101 - ``raincloud-plot.qzv``
102
103
104 |
105
106 </help>
107 <citations>
108 <citation type="doi">10.1038/s41587-019-0209-9</citation>
109 </citations>
110 </tool>