Mercurial > repos > q2d2 > qiime2__vsearch__dereplicate_sequences
changeset 1:89cf98a14b38 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit 69da7976573cc07a363ac66bdacc9269d7cd3732
| author | q2d2 |
|---|---|
| date | Fri, 13 Jan 2023 23:01:56 +0000 |
| parents | 29ceae287ad6 |
| children | 4fb2b5e9beba |
| files | qiime2__vsearch__dereplicate_sequences.xml |
| diffstat | 1 files changed, 8 insertions(+), 6 deletions(-) [+] |
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--- a/qiime2__vsearch__dereplicate_sequences.xml Mon Aug 29 20:33:04 2022 +0000 +++ b/qiime2__vsearch__dereplicate_sequences.xml Fri Jan 13 23:01:56 2023 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2022, QIIME 2 development team. +Copyright (c) 2023, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.8.1) + q2galaxy (version: 2022.11.1) for: - qiime2 (version: 2022.8.1) + qiime2 (version: 2022.11.1) --> -<tool name="qiime2 vsearch dereplicate-sequences" id="qiime2__vsearch__dereplicate_sequences" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 vsearch dereplicate-sequences" id="qiime2__vsearch__dereplicate_sequences" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> <description>Dereplicate sequences.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.8</container> + <container type="docker">quay.io/qiime2/core:2022.11</container> </requirements> <version_command>q2galaxy version vsearch</version_command> - <command detect_errors="aggressive">q2galaxy run vsearch dereplicate_sequences '$inputs'</command> + <command detect_errors="exit_code">q2galaxy run vsearch dereplicate_sequences '$inputs'</command> <configfiles> <inputs name="inputs" data_style="paths"/> </configfiles> @@ -31,6 +31,8 @@ </param> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> <param name="derep_prefix" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="derep_prefix: Bool" help="[default: No] Merge sequences with identical prefixes. If a sequence is identical to the prefix of two or more longer sequences, it is clustered with the shortest of them. If they are equally long, it is clustered with the most abundant."/> + <param name="min_seq_length" type="integer" min="1" value="1" label="min_seq_length: Int % Range(1, None)" help="[default: 1] Discard sequences shorter than this integer."/> + <param name="min_unique_size" type="integer" min="1" value="1" label="min_unique_size: Int % Range(1, None)" help="[default: 1] Discard sequences with a post-dereplication abundance value smaller than integer."/> </section> </inputs> <outputs>