# HG changeset patch
# User q2d2
# Date 1746471945 0
# Node ID e20076e2951078d0906243bae3bfaeb0d2d96c7e
# Parent  421396209ac34ff0bdedc9a539f8c55dded4e019
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit b1fccfb38b4873cd4699743033449014a2978e7d

diff -r 421396209ac3 -r e20076e29510 qiime2__vsearch__merge_pairs.xml
--- a/qiime2__vsearch__merge_pairs.xml	Wed Oct 30 19:59:52 2024 +0000
+++ b/qiime2__vsearch__merge_pairs.xml	Mon May 05 19:05:45 2025 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2024, QIIME 2 development team.
+Copyright (c) 2025, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.10.0)
+    q2galaxy (version: 2025.4.0)
 for:
-    qiime2 (version: 2024.10.1)
+    qiime2 (version: 2025.4.0)
 -->
-<tool name="qiime2 vsearch merge-pairs" id="qiime2__vsearch__merge_pairs" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 vsearch merge-pairs" id="qiime2__vsearch__merge_pairs" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
     <description>Merge paired-end reads.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
     </requirements>
     <version_command>q2galaxy version vsearch</version_command>
     <command detect_errors="exit_code">q2galaxy run vsearch merge_pairs '$inputs'</command>
@@ -40,6 +40,10 @@
             <param name="minmergelen" type="integer" min="0" optional="true" label="minmergelen: Int % Range(0, None)" help="[optional]  Minimum length of the merged read to be retained."/>
             <param name="maxmergelen" type="integer" min="0" optional="true" label="maxmergelen: Int % Range(0, None)" help="[optional]  Maximum length of the merged read to be retained."/>
             <param name="maxee" type="float" min="0.0" optional="true" label="maxee: Float % Range(0.0, None)" help="[optional]  Maximum number of expected errors in the merged read to be retained."/>
+            <param name="qmin" type="integer" min="0" value="0" label="qmin: Int % Range(0, None)" help="[default: 0]  Minimum quality score accepted when reading FASTQ files."/>
+            <param name="qminout" type="integer" min="0" value="0" label="qminout: Int % Range(0, None)" help="[default: 0]  Minimum quality score used when writing FASTQ files. Only applies to overlap region."/>
+            <param name="qmax" type="integer" min="0" value="41" label="qmax: Int % Range(0, None)" help="[default: 41]  Maximum quality score accepted when reading FASTQ files."/>
+            <param name="qmaxout" type="integer" min="0" value="41" label="qmaxout: Int % Range(0, None)" help="[default: 41]  Maximum quality score used when writing FASTQ files. Only applies to overlap region."/>
         </section>
     </inputs>
     <outputs>
diff -r 421396209ac3 -r e20076e29510 test-data/cluster_features_de_novo.test0.seqs1.qza
Binary file test-data/cluster_features_de_novo.test0.seqs1.qza has changed
diff -r 421396209ac3 -r e20076e29510 test-data/cluster_features_de_novo.test0.table1.qza
Binary file test-data/cluster_features_de_novo.test0.table1.qza has changed