Mercurial > repos > q2d2 > qiime2__vsearch__merge_pairs
changeset 5:e20076e29510 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit b1fccfb38b4873cd4699743033449014a2978e7d
| author | q2d2 |
|---|---|
| date | Mon, 05 May 2025 19:05:45 +0000 (3 days ago) |
| parents | 421396209ac3 |
| children | |
| files | qiime2__vsearch__merge_pairs.xml test-data/cluster_features_de_novo.test0.seqs1.qza test-data/cluster_features_de_novo.test0.table1.qza |
| diffstat | 3 files changed, 9 insertions(+), 5 deletions(-) [+] |
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--- a/qiime2__vsearch__merge_pairs.xml Wed Oct 30 19:59:52 2024 +0000 +++ b/qiime2__vsearch__merge_pairs.xml Mon May 05 19:05:45 2025 +0000 @@ -1,22 +1,22 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2024, QIIME 2 development team. +Copyright (c) 2025, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.10.0) + q2galaxy (version: 2025.4.0) for: - qiime2 (version: 2024.10.1) + qiime2 (version: 2025.4.0) --> -<tool name="qiime2 vsearch merge-pairs" id="qiime2__vsearch__merge_pairs" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 vsearch merge-pairs" id="qiime2__vsearch__merge_pairs" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause"> <description>Merge paired-end reads.</description> <xrefs> <xref type="bio.tools">qiime2</xref> </xrefs> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.10</container> + <container type="docker">quay.io/qiime2/amplicon:2025.4</container> </requirements> <version_command>q2galaxy version vsearch</version_command> <command detect_errors="exit_code">q2galaxy run vsearch merge_pairs '$inputs'</command> @@ -40,6 +40,10 @@ <param name="minmergelen" type="integer" min="0" optional="true" label="minmergelen: Int % Range(0, None)" help="[optional] Minimum length of the merged read to be retained."/> <param name="maxmergelen" type="integer" min="0" optional="true" label="maxmergelen: Int % Range(0, None)" help="[optional] Maximum length of the merged read to be retained."/> <param name="maxee" type="float" min="0.0" optional="true" label="maxee: Float % Range(0.0, None)" help="[optional] Maximum number of expected errors in the merged read to be retained."/> + <param name="qmin" type="integer" min="0" value="0" label="qmin: Int % Range(0, None)" help="[default: 0] Minimum quality score accepted when reading FASTQ files."/> + <param name="qminout" type="integer" min="0" value="0" label="qminout: Int % Range(0, None)" help="[default: 0] Minimum quality score used when writing FASTQ files. Only applies to overlap region."/> + <param name="qmax" type="integer" min="0" value="41" label="qmax: Int % Range(0, None)" help="[default: 41] Maximum quality score accepted when reading FASTQ files."/> + <param name="qmaxout" type="integer" min="0" value="41" label="qmaxout: Int % Range(0, None)" help="[default: 41] Maximum quality score used when writing FASTQ files. Only applies to overlap region."/> </section> </inputs> <outputs>