# HG changeset patch
# User q2d2
# Date 1661805454 0
# Node ID 0214b9ae8a6e665dfec5af0e22270518c45092e9

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1

diff -r 000000000000 -r 0214b9ae8a6e qiime2_core__tools__export.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2_core__tools__export.xml	Mon Aug 29 20:37:34 2022 +0000
@@ -0,0 +1,891 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 tools export" id="qiime2_core__tools__export" version="2022.8.1+dist.h91e3be72.2" profile="22.05" license="BSD-3-Clause">
+    <description>Export data from a QIIME 2 artifact</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <command>q2galaxy run tools export '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <param name="input" type="data" format="qza" label="input: The path to the artifact you want to export"/>
+        <param name="type_peek" type="select" label="The type of your input qza is:" display="radio">
+            <options>
+                <filter type="data_meta" key="semantic_type" ref="input"/>
+            </options>
+        </param>
+        <param name="fmt_peek" type="select" label="The current QIIME 2 format is:" display="radio">
+            <options>
+                <filter type="data_meta" key="format" ref="input"/>
+            </options>
+        </param>
+        <conditional name="fmt_finder">
+            <param name="type" type="select" label="To change the format, select the type indicated above:">
+                <option value="None" selected="true">export as is (no conversion)</option>
+                <option value="Bowtie2Index">Bowtie2Index</option>
+                <option value="DeblurStats">DeblurStats</option>
+                <option value="DistanceMatrix">DistanceMatrix</option>
+                <option value="EMPPairedEndSequences">EMPPairedEndSequences</option>
+                <option value="EMPSingleEndSequences">EMPSingleEndSequences</option>
+                <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option>
+                <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option>
+                <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option>
+                <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option>
+                <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option>
+                <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option>
+                <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option>
+                <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option>
+                <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option>
+                <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option>
+                <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option>
+                <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option>
+                <option value="FeatureData__ob__Taxonomy__cb__">FeatureData[Taxonomy]</option>
+                <option value="FeatureTable__ob__Balance__cb__">FeatureTable[Balance]</option>
+                <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option>
+                <option value="FeatureTable__ob__Design__cb__">FeatureTable[Design]</option>
+                <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option>
+                <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option>
+                <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option>
+                <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option>
+                <option value="Hierarchy">Hierarchy</option>
+                <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option>
+                <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option>
+                <option value="PCoAResults">PCoAResults</option>
+                <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option>
+                <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option>
+                <option value="Placements">Placements</option>
+                <option value="ProcrustesStatistics">ProcrustesStatistics</option>
+                <option value="QualityFilterStats">QualityFilterStats</option>
+                <option value="RawSequences">RawSequences</option>
+                <option value="SampleData__ob__AlphaDiversity__cb__">SampleData[AlphaDiversity]</option>
+                <option value="SampleData__ob__ArtificialGrouping__cb__">SampleData[ArtificialGrouping]</option>
+                <option value="SampleData__ob__BooleanSeries__cb__">SampleData[BooleanSeries]</option>
+                <option value="SampleData__ob__ClassifierPredictions__cb__">SampleData[ClassifierPredictions]</option>
+                <option value="SampleData__ob__DADA2Stats__cb__">SampleData[DADA2Stats]</option>
+                <option value="SampleData__ob__FirstDifferences__cb__">SampleData[FirstDifferences]</option>
+                <option value="SampleData__ob__JoinedSequencesWithQuality__cb__">SampleData[JoinedSequencesWithQuality]</option>
+                <option value="SampleData__ob__PairedEndSequencesWithQuality__cb__">SampleData[PairedEndSequencesWithQuality]</option>
+                <option value="SampleData__ob__Probabilities__cb__">SampleData[Probabilities]</option>
+                <option value="SampleData__ob__RegressorPredictions__cb__">SampleData[RegressorPredictions]</option>
+                <option value="SampleData__ob__SequencesWithQuality__cb__">SampleData[SequencesWithQuality]</option>
+                <option value="SampleData__ob__Sequences__cb__">SampleData[Sequences]</option>
+                <option value="SampleData__ob__TrueTargets__cb__">SampleData[TrueTargets]</option>
+                <option value="SampleEstimator__ob__Classifier__cb__">SampleEstimator[Classifier]</option>
+                <option value="SampleEstimator__ob__Regressor__cb__">SampleEstimator[Regressor]</option>
+                <option value="SeppReferenceDatabase">SeppReferenceDatabase</option>
+                <option value="TaxonomicClassifier">TaxonomicClassifier</option>
+                <option value="UchimeStats">UchimeStats</option>
+            </param>
+            <when value="None">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                </param>
+            </when>
+            <when value="Bowtie2Index">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="Bowtie2IndexDirFmt">Bowtie2 Index Directory Format</option>
+                </param>
+            </when>
+            <when value="DeblurStats">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="DeblurStatsFmt">Deblur Stats Format</option>
+                </param>
+            </when>
+            <when value="DistanceMatrix">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="LSMatFormat">LS Mat Format</option>
+                </param>
+            </when>
+            <when value="EMPPairedEndSequences">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="EMPPairedEndDirFmt">EMP Paired End Directory Format</option>
+                </param>
+            </when>
+            <when value="EMPSingleEndSequences">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
+                </param>
+            </when>
+            <when value="ErrorCorrectionDetails">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__AlignedProteinSequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="AlignedProteinFASTAFormat">Aligned Protein FASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__AlignedRNASequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="AlignedRNAFASTAFormat">Aligned RNAFASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__AlignedSequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="AlignedDNAFASTAFormat">Aligned DNAFASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__BLAST6__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BLAST6Format">BLAST6 Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__Differential__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="DifferentialFormat">Differential Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__Importance__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="ImportanceFormat">Importance Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__PairedEndRNASequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PairedRNASequencesDirectoryFormat">Paired RNA Sequences Directory Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__PairedEndSequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PairedDNASequencesDirectoryFormat">Paired DNA Sequences Directory Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__ProteinSequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="ProteinFASTAFormat">Protein FASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__RNASequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="RNAFASTAFormat">RNAFASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__Sequence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="DNAFASTAFormat">DNAFASTA Format</option>
+                </param>
+            </when>
+            <when value="FeatureData__ob__Taxonomy__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__Balance__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__Composition__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__Design__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__Frequency__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__PercentileNormalized__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__PresenceAbsence__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="FeatureTable__ob__RelativeFrequency__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BIOMV210Format">BIOMV210 Format</option>
+                    <option value="TSVTaxonomyFormat">TSV Taxonomy Format</option>
+                </param>
+            </when>
+            <when value="Hierarchy">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="NewickFormat">Newick Format</option>
+                </param>
+            </when>
+            <when value="MultiplexedPairedEndBarcodeInSequence">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="MultiplexedPairedEndBarcodeInSequenceDirFmt">Multiplexed Paired End Barcode In Sequence Directory Format</option>
+                </param>
+            </when>
+            <when value="MultiplexedSingleEndBarcodeInSequence">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="FastqGzFormat">Fastq Gz Format</option>
+                </param>
+            </when>
+            <when value="PCoAResults">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="OrdinationFormat">Ordination Format</option>
+                </param>
+            </when>
+            <when value="Phylogeny__ob__Rooted__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="NewickFormat">Newick Format</option>
+                </param>
+            </when>
+            <when value="Phylogeny__ob__Unrooted__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="NewickFormat">Newick Format</option>
+                </param>
+            </when>
+            <when value="Placements">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PlacementsFormat">Placements Format</option>
+                </param>
+            </when>
+            <when value="ProcrustesStatistics">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="ProcrustesStatisticsFmt">Procrustes Statistics Format</option>
+                </param>
+            </when>
+            <when value="QualityFilterStats">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="QualityFilterStatsFmt">Quality Filter Stats Format</option>
+                </param>
+            </when>
+            <when value="RawSequences">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="EMPSingleEndDirFmt">EMP Single End Directory Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__AlphaDiversity__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="AlphaDiversityFormat">Alpha Diversity Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__ArtificialGrouping__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="ArtificialGroupingFormat">Artificial Grouping Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__BooleanSeries__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="BooleanSeriesFormat">Boolean Series Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__ClassifierPredictions__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PredictionsFormat">Predictions Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__DADA2Stats__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="DADA2StatsFormat">DADA2 Stats Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__FirstDifferences__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="FirstDifferencesFormat">First Differences Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__JoinedSequencesWithQuality__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
+                    <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
+                    <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__PairedEndSequencesWithQuality__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
+                    <option value="SingleLanePerSamplePairedEndFastqDirFmt">Single Lane Per Sample Paired End Fastq Directory Format</option>
+                    <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__Probabilities__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="ProbabilitiesFormat">Probabilities Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__RegressorPredictions__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PredictionsFormat">Predictions Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__SequencesWithQuality__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="CasavaOneEightSingleLanePerSampleDirFmt">Casava One Eight Single Lane Per Sample Directory Format</option>
+                    <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
+                    <option value="SingleLanePerSampleSingleEndFastqDirFmt">Single Lane Per Sample Single End Fastq Directory Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__Sequences__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="QIIME1DemuxFormat">QIIME1 Demux Format</option>
+                </param>
+            </when>
+            <when value="SampleData__ob__TrueTargets__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="PredictionsFormat">Predictions Format</option>
+                </param>
+            </when>
+            <when value="SampleEstimator__ob__Classifier__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
+                </param>
+            </when>
+            <when value="SampleEstimator__ob__Regressor__cb__">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="SampleEstimatorDirFmt">Sample Estimator Directory Format</option>
+                </param>
+            </when>
+            <when value="SeppReferenceDatabase">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="SeppReferenceDirFmt">Sepp Reference Directory Format</option>
+                </param>
+            </when>
+            <when value="TaxonomicClassifier">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="TaxonomicClassiferTemporaryPickleDirFmt">Taxonomic Classifer Temporary Pickle Directory Format</option>
+                </param>
+            </when>
+            <when value="UchimeStats">
+                <param name="output_format" type="select" label="QIIME 2 file format to convert to:">
+                    <option value="None" selected="true">export as is (no conversion)</option>
+                    <option value="UchimeStatsFmt">Uchime Stats Format</option>
+                </param>
+            </when>
+        </conditional>
+    </inputs>
+    <outputs>
+        <collection name="exported" type="list" label="${tool.name} on ${on_string} as ${fmt_peek}">
+            <filter>fmt_finder['output_format'] == 'None' and fmt_peek not in {'NewickFormat', 'DADA2StatsFormat', 'AlignedProteinFASTAFormat', 'QualityFilterStatsDirFmt', 'ProbabilitiesFormat', 'OrdinationFormat', 'SingleLanePerSamplePairedEndFastqDirFmt', 'EMPPairedEndDirFmt', 'MultiplexedSingleEndBarcodeInSequenceDirFmt', 'AlignedDNASequencesDirectoryFormat', 'TSVTaxonomyDirectoryFormat', 'AlignedRNAFASTAFormat', 'MultiplexedPairedEndBarcodeInSequenceDirFmt', 'BooleanSeriesFormat', 'QualityFilterStatsFmt', 'BIOMV210DirFmt', 'EMPSingleEndDirFmt', 'Bowtie2IndexDirFmt', 'PlacementsFormat', 'TrueTargetsDirectoryFormat', 'AlignedRNASequencesDirectoryFormat', 'ProbabilitiesDirectoryFormat', 'ArtificialGroupingDirectoryFormat', 'DifferentialDirectoryFormat', 'AlignedDNAFASTAFormat', 'LSMatFormat', 'FastqGzFormat', 'RNASequencesDirectoryFormat', 'ProteinSequencesDirectoryFormat', 'DADA2StatsDirFmt', 'SeppReferenceDirFmt', 'DNAFASTAFormat', 'QIIME1DemuxDirFmt', 'BooleanSeriesDirectoryFormat', 'PairedRNASequencesDirectoryFormat', 'AlphaDiversityFormat', 'PlacementsDirFmt', 'ProcrustesStatisticsDirFmt', 'ImportanceFormat', 'NewickDirectoryFormat', 'TSVTaxonomyFormat', 'DifferentialFormat', 'QIIME1DemuxFormat', 'CasavaOneEightSingleLanePerSampleDirFmt', 'BLAST6Format', 'UchimeStatsFmt', 'FirstDifferencesFormat', 'PredictionsDirectoryFormat', 'ProcrustesStatisticsFmt', 'SingleLanePerSampleSingleEndFastqDirFmt', 'AlignedProteinSequencesDirectoryFormat', 'SampleEstimatorDirFmt', 'RNAFASTAFormat', 'ProteinFASTAFormat', 'ArtificialGroupingFormat', 'AlphaDiversityDirectoryFormat', 'UchimeStatsDirFmt', 'TaxonomicClassiferTemporaryPickleDirFmt', 'PairedDNASequencesDirectoryFormat', 'DNASequencesDirectoryFormat', 'DistanceMatrixDirectoryFormat', 'DeblurStatsFmt', 'DeblurStatsDirFmt', 'ErrorCorrectionDetailsDirFmt', 'OrdinationDirectoryFormat', 'BLAST6DirectoryFormat', 'BIOMV210Format', 'PredictionsFormat', 'ImportanceDirectoryFormat', 'FirstDifferencesDirectoryFormat'}</filter>
+            <discover_datasets pattern="__designation_and_ext__" visible="false"/>
+        </collection>
+        <data name="AlignedDNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedDNAFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedDNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNAFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="AlignedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedDNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedDNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="AlignedProteinFASTAFormat" label="${tool.name} on ${on_string} as AlignedProteinFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="AlignedProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedProteinSequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedProteinSequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="AlignedRNAFASTAFormat" label="${tool.name} on ${on_string} as AlignedRNAFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedRNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNAFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="AlignedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as AlignedRNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'AlignedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlignedRNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="AlphaDiversityDirectoryFormat" label="${tool.name} on ${on_string} as AlphaDiversityDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'AlphaDiversityDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;alpha-diversity)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="AlphaDiversityFormat" label="${tool.name} on ${on_string} as AlphaDiversityFormat">
+            <filter>fmt_finder['output_format'] == 'AlphaDiversityFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'AlphaDiversityFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ArtificialGroupingDirectoryFormat" label="${tool.name} on ${on_string} as ArtificialGroupingDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'ArtificialGroupingDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;artificial-groupings)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="ArtificialGroupingFormat" label="${tool.name} on ${on_string} as ArtificialGroupingFormat">
+            <filter>fmt_finder['output_format'] == 'ArtificialGroupingFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ArtificialGroupingFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="BIOMV210DirFmt" label="${tool.name} on ${on_string} as BIOMV210DirFmt">
+            <filter>fmt_finder['output_format'] == 'BIOMV210DirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210DirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;feature-table)\.(?P&lt;ext&gt;biom)" visible="true"/>
+        </data>
+        <data name="BIOMV210Format" label="${tool.name} on ${on_string} as BIOMV210Format">
+            <filter>fmt_finder['output_format'] == 'BIOMV210Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BIOMV210Format')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="BLAST6DirectoryFormat" label="${tool.name} on ${on_string} as BLAST6DirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'BLAST6DirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6DirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;blast6)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="BLAST6Format" label="${tool.name} on ${on_string} as BLAST6Format">
+            <filter>fmt_finder['output_format'] == 'BLAST6Format' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BLAST6Format')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="BooleanSeriesDirectoryFormat" label="${tool.name} on ${on_string} as BooleanSeriesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'BooleanSeriesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;outliers)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="BooleanSeriesFormat" label="${tool.name} on ${on_string} as BooleanSeriesFormat">
+            <filter>fmt_finder['output_format'] == 'BooleanSeriesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'BooleanSeriesFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="Bowtie2IndexDirFmt" label="${tool.name} on ${on_string} as Bowtie2IndexDirFmt">
+            <filter>fmt_finder['output_format'] == 'Bowtie2IndexDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'Bowtie2IndexDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+(?&lt;!\.rev)\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+\.3)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+\.4)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.1)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+\.rev\.2)\.(?P&lt;ext&gt;bt2l?)" visible="true"/>
+        </data>
+        <collection name="CasavaOneEightSingleLanePerSampleDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as CasavaOneEightSingleLanePerSampleDirFmt (sequences)">
+            <filter>fmt_finder['output_format'] == 'CasavaOneEightSingleLanePerSampleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'CasavaOneEightSingleLanePerSampleDirFmt')</filter>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
+        </collection>
+        <data name="DADA2StatsDirFmt" label="${tool.name} on ${on_string} as DADA2StatsDirFmt">
+            <filter>fmt_finder['output_format'] == 'DADA2StatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="DADA2StatsFormat" label="${tool.name} on ${on_string} as DADA2StatsFormat">
+            <filter>fmt_finder['output_format'] == 'DADA2StatsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DADA2StatsFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="DNAFASTAFormat" label="${tool.name} on ${on_string} as DNAFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'DNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNAFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="DNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as DNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'DNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="DeblurStatsDirFmt" label="${tool.name} on ${on_string} as DeblurStatsDirFmt">
+            <filter>fmt_finder['output_format'] == 'DeblurStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
+        </data>
+        <data name="DeblurStatsFmt" label="${tool.name} on ${on_string} as DeblurStatsFmt">
+            <filter>fmt_finder['output_format'] == 'DeblurStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DeblurStatsFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="DifferentialDirectoryFormat" label="${tool.name} on ${on_string} as DifferentialDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'DifferentialDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;differentials)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="DifferentialFormat" label="${tool.name} on ${on_string} as DifferentialFormat">
+            <filter>fmt_finder['output_format'] == 'DifferentialFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DifferentialFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="DistanceMatrixDirectoryFormat" label="${tool.name} on ${on_string} as DistanceMatrixDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'DistanceMatrixDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'DistanceMatrixDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;distance-matrix)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="EMPPairedEndDirFmt" label="${tool.name} on ${on_string} as EMPPairedEndDirFmt">
+            <filter>fmt_finder['output_format'] == 'EMPPairedEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPPairedEndDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+        </data>
+        <data name="EMPSingleEndDirFmt" label="${tool.name} on ${on_string} as EMPSingleEndDirFmt">
+            <filter>fmt_finder['output_format'] == 'EMPSingleEndDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'EMPSingleEndDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sequences)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;barcodes)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+        </data>
+        <data name="ErrorCorrectionDetailsDirFmt" label="${tool.name} on ${on_string} as ErrorCorrectionDetailsDirFmt">
+            <filter>fmt_finder['output_format'] == 'ErrorCorrectionDetailsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ErrorCorrectionDetailsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;details)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="FastqGzFormat" label="${tool.name} on ${on_string} as FastqGzFormat">
+            <filter>fmt_finder['output_format'] == 'FastqGzFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FastqGzFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="FirstDifferencesDirectoryFormat" label="${tool.name} on ${on_string} as FirstDifferencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'FirstDifferencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;FirstDifferences)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="FirstDifferencesFormat" label="${tool.name} on ${on_string} as FirstDifferencesFormat">
+            <filter>fmt_finder['output_format'] == 'FirstDifferencesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'FirstDifferencesFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ImportanceDirectoryFormat" label="${tool.name} on ${on_string} as ImportanceDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'ImportanceDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;importance)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="ImportanceFormat" label="${tool.name} on ${on_string} as ImportanceFormat">
+            <filter>fmt_finder['output_format'] == 'ImportanceFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ImportanceFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="LSMatFormat" label="${tool.name} on ${on_string} as LSMatFormat">
+            <filter>fmt_finder['output_format'] == 'LSMatFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'LSMatFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="MultiplexedPairedEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedPairedEndBarcodeInSequenceDirFmt">
+            <filter>fmt_finder['output_format'] == 'MultiplexedPairedEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedPairedEndBarcodeInSequenceDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;reverse)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+        </data>
+        <data name="MultiplexedSingleEndBarcodeInSequenceDirFmt" label="${tool.name} on ${on_string} as MultiplexedSingleEndBarcodeInSequenceDirFmt">
+            <filter>fmt_finder['output_format'] == 'MultiplexedSingleEndBarcodeInSequenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'MultiplexedSingleEndBarcodeInSequenceDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;forward)\.(?P&lt;ext&gt;fastq.gz)" visible="true"/>
+        </data>
+        <data name="NewickDirectoryFormat" label="${tool.name} on ${on_string} as NewickDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'NewickDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
+        </data>
+        <data name="NewickFormat" label="${tool.name} on ${on_string} as NewickFormat">
+            <filter>fmt_finder['output_format'] == 'NewickFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'NewickFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="OrdinationDirectoryFormat" label="${tool.name} on ${on_string} as OrdinationDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'OrdinationDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ordination)\.(?P&lt;ext&gt;txt)" visible="true"/>
+        </data>
+        <data name="OrdinationFormat" label="${tool.name} on ${on_string} as OrdinationFormat">
+            <filter>fmt_finder['output_format'] == 'OrdinationFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'OrdinationFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="PairedDNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedDNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'PairedDNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedDNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;right-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="PairedRNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as PairedRNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'PairedRNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PairedRNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;left-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;right-rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="PlacementsDirFmt" label="${tool.name} on ${on_string} as PlacementsDirFmt">
+            <filter>fmt_finder['output_format'] == 'PlacementsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;placements)\.(?P&lt;ext&gt;json)" visible="true"/>
+        </data>
+        <data name="PlacementsFormat" label="${tool.name} on ${on_string} as PlacementsFormat">
+            <filter>fmt_finder['output_format'] == 'PlacementsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PlacementsFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="PredictionsDirectoryFormat" label="${tool.name} on ${on_string} as PredictionsDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'PredictionsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;predictions)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="PredictionsFormat" label="${tool.name} on ${on_string} as PredictionsFormat">
+            <filter>fmt_finder['output_format'] == 'PredictionsFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'PredictionsFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ProbabilitiesDirectoryFormat" label="${tool.name} on ${on_string} as ProbabilitiesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'ProbabilitiesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;class_probabilities)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="ProbabilitiesFormat" label="${tool.name} on ${on_string} as ProbabilitiesFormat">
+            <filter>fmt_finder['output_format'] == 'ProbabilitiesFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProbabilitiesFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ProcrustesStatisticsDirFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsDirFmt">
+            <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;ProcrustesStatistics)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="ProcrustesStatisticsFmt" label="${tool.name} on ${on_string} as ProcrustesStatisticsFmt">
+            <filter>fmt_finder['output_format'] == 'ProcrustesStatisticsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProcrustesStatisticsFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ProteinFASTAFormat" label="${tool.name} on ${on_string} as ProteinFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'ProteinFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="ProteinSequencesDirectoryFormat" label="${tool.name} on ${on_string} as ProteinSequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'ProteinSequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'ProteinSequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;protein-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="QIIME1DemuxDirFmt" label="${tool.name} on ${on_string} as QIIME1DemuxDirFmt">
+            <filter>fmt_finder['output_format'] == 'QIIME1DemuxDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;seqs)\.(?P&lt;ext&gt;fna)" visible="true"/>
+        </data>
+        <data name="QIIME1DemuxFormat" label="${tool.name} on ${on_string} as QIIME1DemuxFormat">
+            <filter>fmt_finder['output_format'] == 'QIIME1DemuxFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QIIME1DemuxFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="QualityFilterStatsDirFmt" label="${tool.name} on ${on_string} as QualityFilterStatsDirFmt">
+            <filter>fmt_finder['output_format'] == 'QualityFilterStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;csv)" visible="true"/>
+        </data>
+        <data name="QualityFilterStatsFmt" label="${tool.name} on ${on_string} as QualityFilterStatsFmt">
+            <filter>fmt_finder['output_format'] == 'QualityFilterStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'QualityFilterStatsFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="RNAFASTAFormat" label="${tool.name} on ${on_string} as RNAFASTAFormat">
+            <filter>fmt_finder['output_format'] == 'RNAFASTAFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNAFASTAFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="RNASequencesDirectoryFormat" label="${tool.name} on ${on_string} as RNASequencesDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'RNASequencesDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'RNASequencesDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;rna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+        </data>
+        <data name="SampleEstimatorDirFmt" label="${tool.name} on ${on_string} as SampleEstimatorDirFmt">
+            <filter>fmt_finder['output_format'] == 'SampleEstimatorDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SampleEstimatorDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
+        </data>
+        <data name="SeppReferenceDirFmt" label="${tool.name} on ${on_string} as SeppReferenceDirFmt">
+            <filter>fmt_finder['output_format'] == 'SeppReferenceDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SeppReferenceDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;aligned-dna-sequences)\.(?P&lt;ext&gt;fasta)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;tree)\.(?P&lt;ext&gt;nwk)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;raxml-info)\.(?P&lt;ext&gt;txt)" visible="true"/>
+        </data>
+        <collection name="SingleLanePerSamplePairedEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt (sequences)">
+            <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
+        </collection>
+        <data name="SingleLanePerSamplePairedEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSamplePairedEndFastqDirFmt">
+            <filter>fmt_finder['output_format'] == 'SingleLanePerSamplePairedEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSamplePairedEndFastqDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
+        </data>
+        <collection name="SingleLanePerSampleSingleEndFastqDirFmt_sequences" type="list" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt (sequences)">
+            <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
+            <discover_datasets pattern="(?P&lt;designation&gt;.+_.+_L[0-9][0-9][0-9]_R[12]_001)\.(?P&lt;ext&gt;fastq\.gz)" visible="false"/>
+        </collection>
+        <data name="SingleLanePerSampleSingleEndFastqDirFmt" label="${tool.name} on ${on_string} as SingleLanePerSampleSingleEndFastqDirFmt">
+            <filter>fmt_finder['output_format'] == 'SingleLanePerSampleSingleEndFastqDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'SingleLanePerSampleSingleEndFastqDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" ext="txt" pattern="(?P&lt;designation&gt;MANIFEST)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;metadata)\.(?P&lt;ext&gt;yml)" visible="true"/>
+        </data>
+        <data name="TSVTaxonomyDirectoryFormat" label="${tool.name} on ${on_string} as TSVTaxonomyDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'TSVTaxonomyDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;taxonomy)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="TSVTaxonomyFormat" label="${tool.name} on ${on_string} as TSVTaxonomyFormat">
+            <filter>fmt_finder['output_format'] == 'TSVTaxonomyFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TSVTaxonomyFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+        <data name="TaxonomicClassiferTemporaryPickleDirFmt" label="${tool.name} on ${on_string} as TaxonomicClassiferTemporaryPickleDirFmt">
+            <filter>fmt_finder['output_format'] == 'TaxonomicClassiferTemporaryPickleDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TaxonomicClassiferTemporaryPickleDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;sklearn_version)\.(?P&lt;ext&gt;json)" visible="true"/>
+            <discover_datasets pattern="(?P&lt;designation&gt;sklearn_pipeline)\.(?P&lt;ext&gt;tar)" visible="true"/>
+        </data>
+        <data name="TrueTargetsDirectoryFormat" label="${tool.name} on ${on_string} as TrueTargetsDirectoryFormat">
+            <filter>fmt_finder['output_format'] == 'TrueTargetsDirectoryFormat' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'TrueTargetsDirectoryFormat')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;true_targets)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="UchimeStatsDirFmt" label="${tool.name} on ${on_string} as UchimeStatsDirFmt">
+            <filter>fmt_finder['output_format'] == 'UchimeStatsDirFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsDirFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="(?P&lt;designation&gt;stats)\.(?P&lt;ext&gt;tsv)" visible="true"/>
+        </data>
+        <data name="UchimeStatsFmt" label="${tool.name} on ${on_string} as UchimeStatsFmt">
+            <filter>fmt_finder['output_format'] == 'UchimeStatsFmt' or (fmt_finder['output_format'] == 'None' and fmt_peek == 'UchimeStatsFmt')</filter>
+            <discover_datasets assign_primary_output="true" pattern="__designation_and_ext__" visible="true"/>
+        </data>
+    </outputs>
+    <help>
+QIIME 2: tools export
+=====================
+Export a QIIME 2 artifact to different formats
+
+Instructions
+------------
+
+1. Select the QZA you would like to export. Once selected, two fields will
+   update indicating the type and format of this QZA.
+
+2. If you wish to change the output format, first provide the same type as
+   the QZA (which is shown above). This will filter the avaiable formats.
+
+3. Select the format you desire. Some limited documentation is available on
+   these formats below.
+
+**IMPORTANT:** if you select the wrong type when exporting, you will recieve an
+error suggesting "No transformation from &lt;X&gt; to &lt;Y&gt;".
+
+Formats:
+--------
+These formats have documentation available.
+
+TSVTaxonomyFormat
+*****************
+Format for a 2+ column TSV file with an expected minimal header.
+
+The only header recognized by this format is:
+
+    Feature ID&lt;tab&gt;Taxon
+
+Optionally followed by other arbitrary columns.
+
+This format supports blank lines. The expected header must be the first
+non-blank line. In addition to the header, there must be at least one line
+of data.
+
+
+QIIME1DemuxFormat
+*****************
+QIIME 1 demultiplexed FASTA format.
+
+The QIIME 1 demultiplexed FASTA format is the default output format of
+``split_libraries.py`` and ``split_libraries_fastq.py``. The file output by
+QIIME 1 is named ``seqs.fna``; this filename is sometimes associated with
+the file format itself due to its widespread usage in QIIME 1.
+
+The format is documented here:
+http://qiime.org/documentation/file_formats.html#demultiplexed-sequences
+
+Format details:
+
+- FASTA file with exactly two lines per record: header and sequence. Each
+  sequence must span exactly one line and cannot be split across multiple
+  lines.
+
+- The ID in each header must follow the format ``&lt;sample-id&gt;_&lt;seq-id&gt;``.
+  ``&lt;sample-id&gt;`` is the identifier of the sample the sequence belongs to,
+  and ``&lt;seq-id&gt;`` is an identifier for the sequence *within* its sample.
+  In QIIME 1, ``&lt;seq-id&gt;`` is typically an incrementing integer starting
+  from zero, but any non-empty value can be used here, as long as the
+  header IDs remain unique throughout the file. Note: ``&lt;sample-id&gt;`` may
+  contain sample IDs that contain underscores; the rightmost underscore
+  will used to delimit sample and sequence IDs.
+
+- Descriptions in headers are permitted and ignored.
+
+- Header IDs must be unique within the file.
+
+- Each sequence must be DNA and cannot be empty.
+
+
+FastqGzFormat
+*************
+
+A gzipped fastq file.
+
+
+Additional formats without documentation:
+*****************************************
+ - AlignedRNASequencesDirectoryFormat
+ - MultiplexedSingleEndBarcodeInSequenceDirFmt
+ - AlignedDNASequencesDirectoryFormat
+ - NewickFormat
+ - SeppReferenceDirFmt
+ - ProcrustesStatisticsDirFmt
+ - PairedRNASequencesDirectoryFormat
+ - BIOMV210DirFmt
+ - EMPPairedEndDirFmt
+ - DistanceMatrixDirectoryFormat
+ - AlphaDiversityDirectoryFormat
+ - OrdinationDirectoryFormat
+ - ArtificialGroupingFormat
+ - BLAST6Format
+ - RNASequencesDirectoryFormat
+ - ProbabilitiesFormat
+ - PlacementsFormat
+ - DADA2StatsFormat
+ - SampleEstimatorDirFmt
+ - ImportanceFormat
+ - AlignedProteinFASTAFormat
+ - DNASequencesDirectoryFormat
+ - BIOMV210Format
+ - TSVTaxonomyDirectoryFormat
+ - QualityFilterStatsDirFmt
+ - SingleLanePerSampleSingleEndFastqDirFmt
+ - CasavaOneEightSingleLanePerSampleDirFmt
+ - ProteinFASTAFormat
+ - ProbabilitiesDirectoryFormat
+ - DADA2StatsDirFmt
+ - Bowtie2IndexDirFmt
+ - DifferentialFormat
+ - QIIME1DemuxDirFmt
+ - UchimeStatsFmt
+ - DeblurStatsFmt
+ - DeblurStatsDirFmt
+ - AlignedRNAFASTAFormat
+ - NewickDirectoryFormat
+ - EMPSingleEndDirFmt
+ - PredictionsDirectoryFormat
+ - AlignedDNAFASTAFormat
+ - ArtificialGroupingDirectoryFormat
+ - FirstDifferencesDirectoryFormat
+ - ProcrustesStatisticsFmt
+ - FirstDifferencesFormat
+ - BLAST6DirectoryFormat
+ - PairedDNASequencesDirectoryFormat
+ - ErrorCorrectionDetailsDirFmt
+ - MultiplexedPairedEndBarcodeInSequenceDirFmt
+ - LSMatFormat
+ - AlphaDiversityFormat
+ - PlacementsDirFmt
+ - OrdinationFormat
+ - BooleanSeriesFormat
+ - ImportanceDirectoryFormat
+ - AlignedProteinSequencesDirectoryFormat
+ - RNAFASTAFormat
+ - SingleLanePerSamplePairedEndFastqDirFmt
+ - TaxonomicClassiferTemporaryPickleDirFmt
+ - PredictionsFormat
+ - TrueTargetsDirectoryFormat
+ - ProteinSequencesDirectoryFormat
+ - DNAFASTAFormat
+ - QualityFilterStatsFmt
+ - BooleanSeriesDirectoryFormat
+ - DifferentialDirectoryFormat
+ - UchimeStatsDirFmt
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
diff -r 000000000000 -r 0214b9ae8a6e test-data/.gitkeep