Mercurial > repos > qfab > package_uclust_1_2_22q

comparison tool_dependencies.xml @ 0:c0295ba21771 draft default tip

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author qfab
date Thu, 29 May 2014 20:53:16 -0400
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-1:000000000000 0:c0295ba21771
1 <?xml version='1.0'?>
2 <tool_dependency>
3 <package name="uclust" version="1.22.2">
4 <install version="1.0">
5 <actions_group>
6 <!-- Download the binaries for uclust compatible with 64-bit OSX. -->
7 <actions os="darwin" architecture="x86_64">
8 <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86darwin64</action>
9 <action type="move_directory_files">
10 <source_directory>.</source_directory>
11 <destination_directory>$INSTALL_DIR</destination_directory>
12 </action>
13 <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86darwin64 $INSTALL_DIR/uclust</action>
14 </actions>
15 <!-- Download the binaries for uclust compatible with 32-bit OSX. -->
16 <actions os="darwin" architecture="i386">
17 <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86darwin32</action>
18 <action type="move_directory_files">
19 <source_directory>.</source_directory>
20 <destination_directory>$INSTALL_DIR</destination_directory>
21 </action>
22 <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86darwin32 $INSTALL_DIR/uclust</action>
23 </actions>
24 <!-- Download the binaries for uclust compatible with 64-bit Linux. -->
25 <actions os="linux" architecture="x86_64">
26 <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86linux64</action>
27 <action type="move_directory_files">
28 <source_directory>.</source_directory>
29 <destination_directory>$INSTALL_DIR</destination_directory>
30 </action>
31 <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86linux64 $INSTALL_DIR/uclust</action>
32 </actions>
33 <!-- Download the binaries for uclust compatible with 32-bit Linux. -->
34 <actions os="linux" architecture="i386">
35 <action type="download_by_url">http://www.drive5.com/uclust/uclustq1.2.22_i86linux32</action>
36 <action type="move_directory_files">
37 <source_directory>.</source_directory>
38 <destination_directory>$INSTALL_DIR</destination_directory>
39 </action>
40 <action type="shell_command">mv $INSTALL_DIR/uclustq1.2.22_i86linux32 $INSTALL_DIR/uclust</action>
41 </actions>
42 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
43 <actions>
44 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action>
45 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action>
46 <action type="shell_command">uname</action>
47 <action type="shell_command">arch</action>
48 <action type="shell_command">echo Please report this via support@qfab.org - thank you!</action>
49 <action type="shell_command">false</action>
50 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
51 </actions>
52 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
53 <action type="shell_command">chmod ugo+x $INSTALL_DIR/uclust</action>
54 <action type="set_environment">
55 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
56 </action>
57 </actions_group>
58 </install>
59 <readme>
60 Downloads the precompiled 32bit Linux, 64bit Linux, or Mac 64-bit OS X mothur binaries, which is faster than performing a local compliation, avoids any issues with build dependencies, and is more reproducible between installations as there is no variability from the compiler or library versions.
61 </readme>
62 </package>
63 </tool_dependency>