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comparison rdpmulticlassifier/rdpmulticlassifier.sh @ 0:a73ae72b47aa draft default tip

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author qfab
date Thu, 29 May 2014 02:27:56 -0400
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-1:000000000000 0:a73ae72b47aa
1 #!/bash/bin
2 #echo $@
3
4 gene=$1
5 addotutable=$2
6 input_file=$3
7 otu_input_file=$4
8 conf=$5
9 output_hier=$6
10 output_assign=$7
11 output_otutable=$8
12 format=$9
13 full_path=$(echo "`dirname $0`";)
14
15 echo `java -Xmx1g -jar $JAVA_JAR_PATH/MultiClassifier.jar --gene=$gene --conf=$conf --hier_outfile=$output_hier --assign_outfile=$output_assign --format=$format $input_file`;
16 if [ $addotutable == True ]
17 then
18 echo `python $full_path\/scripts\/generateOTUtable.py $output_otutable $otu_input_file $output_assign`;
19 fi