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comparison otu_clustering/README.txt @ 0:52043d3d71f5 draft

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author qfab
date Wed, 28 May 2014 21:22:08 -0400
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1 Galaxy wrappers for USEARCH - UPARSE (OTU Clustering)
2 =====================================================
3
4 USEARCH requires a licence. Therefore an automated installation is not
5 possible at the moment.
6
7 Requirements
8 =====================================================
9 Get your licenced USEARCH version 7, but not later then 7.0.1002 from here:
10 http://www.drive5.com/usearch/download.html
11
12
13 Manual Installation Steps
14 =====================================================
15 USEARCH is distributed as one file, known as the binary file or executable
16 file. It is completely self-contained: it does not require configuration
17 files, environment variables, third-party libraries or other external
18 dependencies. There is no setup script or installer because they're not
19 needed. To install it, all you do is download or copy the binary to a
20 directory that is accessible from the computer where you want to run the code.
21
22 Step1:
23 Rename the binary file to usearch.
24
25 Step2:
26 Move the binary file (usearch) to /usr/local/bin
27 Ensure /usr/local/bin is in your path. If needed add /usr/local/bin/ to your
28 path.
29
30 Step3:
31 Ensure that you have read and execute permissions for the binary file.
32 If needed, use the chmod command to set the execute bit, e.g.:
33 chmod +x /usr/local/bin/usearch
34
35
36 Further installation information and help can be found at:
37 http://drive5.com/usearch/manual/install.html
38
39
40 Disclaimer
41 =====================================================
42 This source code is provided by QFAB "as is", in the hope that it will be
43 useful, and any express or implied warranties, including, but not limited to,
44 the implied warranties of merchantability and fitness for a particular purpose
45 are disclaimed.
46 IN NO EVENT SHALL QFAB BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
47 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY
48 OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT(INCLUDING
49 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOURCE
50 CODE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
51
52 License
53 =====================================================
54 This work by QFAB Bioinformatics (as part of the GVL project http://genome.edu.au)
55 is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0
56 International License.