Mercurial > repos > qfab > usearch_cluster_otus
diff otu_clustering/README.txt @ 0:52043d3d71f5 draft
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author | qfab |
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date | Wed, 28 May 2014 21:22:08 -0400 |
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children | 5d05b34a5fdf |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/otu_clustering/README.txt Wed May 28 21:22:08 2014 -0400 @@ -0,0 +1,56 @@ +Galaxy wrappers for USEARCH - UPARSE (OTU Clustering) +===================================================== + +USEARCH requires a licence. Therefore an automated installation is not +possible at the moment. + +Requirements +===================================================== +Get your licenced USEARCH version 7, but not later then 7.0.1002 from here: +http://www.drive5.com/usearch/download.html + + +Manual Installation Steps +===================================================== +USEARCH is distributed as one file, known as the binary file or executable +file. It is completely self-contained: it does not require configuration +files, environment variables, third-party libraries or other external +dependencies. There is no setup script or installer because they're not +needed. To install it, all you do is download or copy the binary to a +directory that is accessible from the computer where you want to run the code. + +Step1: +Rename the binary file to usearch. + +Step2: +Move the binary file (usearch) to /usr/local/bin +Ensure /usr/local/bin is in your path. If needed add /usr/local/bin/ to your +path. + +Step3: +Ensure that you have read and execute permissions for the binary file. +If needed, use the chmod command to set the execute bit, e.g.: +chmod +x /usr/local/bin/usearch + + +Further installation information and help can be found at: +http://drive5.com/usearch/manual/install.html + + +Disclaimer +===================================================== +This source code is provided by QFAB "as is", in the hope that it will be +useful, and any express or implied warranties, including, but not limited to, +the implied warranties of merchantability and fitness for a particular purpose +are disclaimed. +IN NO EVENT SHALL QFAB BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY +OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT(INCLUDING +NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOURCE +CODE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +License +===================================================== +This work by QFAB Bioinformatics (as part of the GVL project http://genome.edu.au) +is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 +International License.