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author qfab
date Wed, 28 May 2014 20:34:11 -0400
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1 Galaxy wrappers for USEARCH - Dereplication
2 ============================================
3
4 USEARCH requires a licence. Therefore an automated installation is not
5 possible at the moment.
6
7 Requirements
8 ============================================
9
10 Get your licenced USEARCH version 7 or greater from here:
11 http://www.drive5.com/usearch/download.html
12
13
14 Manual Installation Steps
15 ============================================
16
17 USEARCH is distributed as one file, known as the binary file or executable
18 file. It is completely self-contained: it does not require configuration
19 files, environment variables, third-party libraries or other external
20 dependencies. There is no setup script or installer because they're not
21 needed. To install it, all you do is download or copy the binary to a
22 directory that is accessible from the computer where you want to run the code.
23
24 Step1:
25 Rename the binary file to usearch.
26
27 Step2:
28 Move the binary file (usearch) to /usr/local/bin
29 Ensure /usr/local/bin is in your path. If needed add /usr/local/bin/ to your
30 path.
31
32 Step3:
33 Ensure that you have read and execute permissions for the binary file.
34 If needed, use the chmod command to set the execute bit, e.g.:
35 chmod +x /usr/local/bin/usearch
36
37
38 Further installation information and help can be found at:
39 http://drive5.com/usearch/manual/install.html
40
41
42 Disclaimer
43 =====================================================
44 This source code is provided by QFAB Bioinformatics "as is", in the hope that it will be
45 useful, and any express or implied warranties, including, but not limited to,
46 the implied warranties of merchantability and fitness for a particular purpose
47 are disclaimed.
48 IN NO EVENT SHALL QFAB BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
49 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY
50 OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT(INCLUDING
51 NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOURCE
52 CODE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
53
54
55 License
56 =====================================================
57 This work by QFAB Bioinformatics (as part of the GVL project
58 http://genome.edu.au)
59 is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0
60 International License.