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"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/pear_stats commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e"
author qfabrepo
date Mon, 14 Sep 2020 04:50:28 +0000
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-1:000000000000 0:ec62f17fcfe6
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5 |_| |_____/_/ \_\_| \_\
6
7 PEAR v0.9.10 [May 30, 2016]
8
9 Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR
10 Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593
11
12 Forward reads file.................: /mnt/galaxy/files/011/dataset_11542.dat
13 Reverse reads file.................: /mnt/galaxy/files/011/dataset_11543.dat
14 PHRED..............................: 33
15 Using empirical frequencies........: NO
16 Statistical method.................: OES
17 Maximum assembly length............: 999999
18 Minimum assembly length............: 50
19 p-value............................: 0.010000
20 Quality score threshold (trimming).: 0
21 Minimum read size after trimming...: 1
22 Maximal ratio of uncalled bases....: 1.000000
23 Minimum overlap....................: 10
24 Scoring method.....................: Scaled score
25 Threads............................: 2
26
27 Allocating memory..................: 200,000,000 bytes
28 Assemblying reads: 0%
29 Assemblying reads: 100%
30
31 Assembled reads ...................: 91 / 99 (91.919%)
32 Discarded reads ...................: 0 / 99 (0.000%)
33 Not assembled reads ...............: 8 / 99 (8.081%)
34 Assembled reads file...............: pear.assembled.fastq
35 Discarded reads file...............: pear.discarded.fastq
36 Unassembled forward reads file.....: pear.unassembled.forward.fastq
37 Unassembled reverse reads file.....: pear.unassembled.reverse.fastq