Mercurial > repos > qfabrepo > metadegalaxy_phyloseq_abundance_taxonomy

annotate phyloseq_abundance_taxonomy.xml @ 0:b2fafdd3533d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
author qfabrepo
date Mon, 14 Sep 2020 08:07:43 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
1 <tool id="phyloseq_taxonomy" name="Phyloseq Abundance Taxonomy" version="1.22.3.3" hidden="false">
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
2 <description>Phyloseq Abundance Plot on Taxonomy level</description>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
3 <requirements>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
4 <requirement type="package" version="3.4.1">r-base</requirement>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
5 <requirement type="package" version="1.22.3">bioconductor-phyloseq</requirement>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
6 <requirement type="package" version="1.20.0">r-getopt</requirement>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
7 <requirement type="package" version="9.18">ghostscript</requirement>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
8 </requirements>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
9 <version_command><![CDATA[
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
10 echo $(R --version | grep version | grep -v GNU)", phyloseq version" $(R --vanilla --slave -e "library(phyloseq); cat(sessionInfo()\$otherPkgs\$phyloseq\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
11 ]]></version_command>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
12 <command detect_errors="exit_code"><![CDATA[
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
13 Rscript '${__tool_directory__}/phyloseq_abundance_taxonomy.r'
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
14 --biomfile='$biom_input'
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
15 --metafile='$metadata_input'
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
16 --xcolumn="${xaxis_column}"
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
17 --lcolumn="${legend_column}"
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
18 --taxonomy="${taxonomy_rank}"
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
19 --outdir="$htmlfile.files_path"
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
20 --htmlfile='$htmlfile'
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
21 ]]></command>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
22
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
23 <inputs>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
24 <param format="biom1" name="biom_input" type="data" label="BIOM file"/>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
25 <param format="tabular" name="metadata_input" type="data" label="Metadata file"/>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
26 <param name="xaxis_column" type="data_column" data_ref="metadata_input" use_header_names="TRUE" label="Column used for X-axis"/>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
27 <param name="legend_column" type="data_column" data_ref="metadata_input" use_header_names="TRUE" label="Column used as legend"/>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
28 <param name="taxonomy_rank" type="select" display="radio" label="Select a taxonomy rank">
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
29 <option value="Kingdom" selected="true">Kingdom</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
30 <option value="Phylum">Phylum</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
31 <option value="Class">Class</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
32 <option value="Order">Order</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
33 <option value="Family">Family</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
34 <option value="Genus">Genus</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
35 <option value="Species">Species</option>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
36 </param>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
37 </inputs>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
38
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
39 <outputs>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
40 <data format="html" name="htmlfile" label="${tool.name}.html"/>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
41 </outputs>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
42
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
43 <tests>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
44 <test>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
45 <param name="biom_input" value="test.biom" ftype="biom1" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
46 <param name="metadata_input" value="metadata.txt" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
47 <param name="xaxis_column" value="5" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
48 <param name="legend_column" value="4" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
49 <param name="taxonomy_rank" value="Phylum" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
50 <output name="htmlfile" ftype="html" file="biom_out.html" />
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
51 </test>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
52 </tests>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
53 <help>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
54 **What it does**
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
55 Creates an abundance with taxonomy barplot using an R package called phyloseq_.
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
56
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
57 .. _phyloseq: https://joey711.github.io/phyloseq/plot_bar-examples.html
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
58
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
59 -----
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
60
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
61 **Input**
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
62
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
63
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
64 - **BIOM file** - this is a BIOM_ file format
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
65 - **Metadata file** - this is a metadata file of the experiment design
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
66 - **Column used for X-axis** - The horizontal x-axis display on the barplot.
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
67 - **Column used as legend** - select a group from the metadata to fill color to represent the group it belongs to.
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
68 - **Select a taxonomy rank** - This is a taxonomy selection.
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
69
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
70
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
71 .. _BIOM: http://biom-format.org/
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
72
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
73 -----
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
74
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
75 =========
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
76 Resources
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
77 =========
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
78
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
79 **Wrapper Authors**
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
80 QFAB Bioinformatics (support@qfab.org)
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
81
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
82 </help>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
83 <citations>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
84 <citation type="doi">10.18129/B9.bioc.phyloseq</citation>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
85 </citations>
b2fafdd3533d "planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_abundance_taxonomy commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
qfabrepo
parents:
diff changeset
86 </tool>