Mercurial > repos > qfabrepo > metadegalaxy_phyloseq_deseq2

comparison test-data/DE_table.txt @ 0:1f0569e94be4 draft

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"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/phyloseq_2_deseq2 commit 8bd68662b72404f6291e9628327dcb109b5fa55e"
author qfabrepo
date Mon, 14 Sep 2020 08:20:41 +0000
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comparison
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-1:000000000000 0:1f0569e94be4
1 OTUID baseMean log2FoldChange lfcSE stat pvalue padj Kingdom Phylum Class Order Family Genus Species
2 641881 11.410 -5.650 1.961 -2.882 0.0039516 0.03244 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
3 611419 17.541 -4.521 1.421 -3.182 0.0014611 0.01628 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
4 636535 28.013 -4.100 1.181 -3.472 0.0005159 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
5 732155 7.531 -6.106 1.812 -3.370 0.0007530 0.01175 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
6 740299 7.125 -6.422 1.722 -3.729 0.0001924 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
7 778075 5.481 -6.041 1.982 -3.048 0.0023037 0.02246 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
8 4444771 32.446 -5.432 1.526 -3.561 0.0003695 0.01023 k__Bacteria p__Tenericutes c__Mollicutes o__RF39 f__ g__ s__
9 134615 2.740 -5.054 1.878 -2.691 0.0071234 0.04832 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
10 301960 24.483 -4.298 1.244 -3.454 0.0005528 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
11 132772 8.022 -6.463 2.233 -2.895 0.0037961 0.03244 k__Bacteria p__Tenericutes c__Mollicutes o__Anaeroplasmatales f__Anaeroplasmataceae g__Anaeroplasma s__
12 274697 8.186 5.443 1.554 3.502 0.0004611 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
13 697688 8.520 -6.665 1.940 -3.436 0.0005899 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
14 787376 16.005 -3.713 1.243 -2.986 0.0028224 0.02590 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
15 131618 5.842 5.445 1.544 3.527 0.0004205 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Lachnospiraceae g__ s__
16 608864 10.316 -3.753 1.382 -2.716 0.0066011 0.04681 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
17 134392 18.989 -3.826 1.366 -2.800 0.0051131 0.03798 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
18 4387364 19.091 -4.696 1.274 -3.687 0.0002271 0.01023 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
19 674084 8.173 -5.078 1.809 -2.807 0.0050048 0.03798 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__ g__ s__
20 795920 17.790 -4.512 1.409 -3.202 0.0013655 0.01628 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Ruminococcaceae g__Oscillospira s__
21 779524 9.120 -5.097 1.667 -3.058 0.0022314 0.02246 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Lachnospiraceae g__ s__
22 832727 6.728 8.476 2.631 3.221 0.0012758 0.01628 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Neisseriales f__Neisseriaceae g__Neisseria s__cinerea
23 4485588 11.660 9.301 2.886 3.223 0.0012687 0.01628 k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Staphylococcaceae g__Staphylococcus s__aureus
24 4485644 4.534 5.096 1.378 3.697 0.0002179 0.01023 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Enterobacteriales f__Enterobacteriaceae g__ s__