Mercurial > repos > qfabrepo > metadegalaxy_uc2otutable
annotate uclust2otutable.xml @ 1:046085ec595c draft
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit b67df82f2bd8af214bba5184e9eab4f187b7a4a6"
| author | qfabrepo |
|---|---|
| date | Wed, 16 Sep 2020 09:27:00 +0000 |
| parents | e85e7ba38aff |
| children | 08ca35e99b74 |
| rev | line source |
|---|---|
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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1 <tool id="uclust2otutable" name="OTUTable" version="1.0.0"> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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2 <description>Convert UCLUST format from Vsearch to OTU Table</description> |
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1
046085ec595c
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit b67df82f2bd8af214bba5184e9eab4f187b7a4a6"
qfabrepo
parents:
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3 <requirements> |
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046085ec595c
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit b67df82f2bd8af214bba5184e9eab4f187b7a4a6"
qfabrepo
parents:
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4 <requirement type="package" version="1.3">progress</requirement> |
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046085ec595c
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit b67df82f2bd8af214bba5184e9eab4f187b7a4a6"
qfabrepo
parents:
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5 </requirements> |
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0
e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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6 <version_command> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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7 python ${__tool_directory__}/uclust2otutable.py --version |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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8 </version_command> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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9 <command detect_errors="aggressive"> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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10 python ${__tool_directory__}/uclust2otutable.py |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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11 -i '$inputfile' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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12 -o '$output' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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13 </command> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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14 <inputs> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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15 <param format="tabular" name="inputfile" type="data" label="UCLUST from Vsearch" /> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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16 </inputs> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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17 <outputs> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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18 <data format="tabular" name="output" label="OTU_TABLE_${inputfile.display_name}"/> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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19 </outputs> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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20 <tests> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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21 <test> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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22 <param name="inputfile" value="uc_input.txt"/> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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23 <output name="output" file="uc_output.txt"/> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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24 </test> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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25 </tests> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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26 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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27 <help> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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28 ** what it does ** |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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29 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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30 Converts UCLUST format (.uc) output from Vsearch search into raw count table. The description of UCLUST format is based on the information that can be found on UCLUST_ documentation page. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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31 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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32 .. _UCLUST: http://www.drive5.com/uclust/uclust_userguide_1_1_579.html |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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33 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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34 -------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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35 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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36 ======= |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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37 Example |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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38 ======= |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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39 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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40 Some example records: |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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41 --------------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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42 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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43 ==== ======= ==== ==== ====== === === ========= ========== ====== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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44 Type Cluster Size %Id Strand Qlo Tlo Alignment Query Target |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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45 ---- ------- ---- ---- ------ --- --- --------- ---------- ------ |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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46 S 0 292 '*' '*' '*' '*' '*' AH70_12410 '*' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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47 H 0 292 99.7 '+' 0 0 292M AH70_12410 '*' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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48 S 0 292 '*' '*' '*' '*' '*' AH70_12410 '*' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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49 H 0 292 98.2 '+' 0 0 292M AH70_12410 '*' |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
parents:
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50 ==== ======= ==== ==== ====== === === ========= ========== ====== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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51 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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52 Each record has ten fields, separated by tabs: |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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53 ---------------------------------------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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54 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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55 ========= =========================================== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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56 Column Description |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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57 --------- ------------------------------------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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58 Type Record type |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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59 Cluster Cluster number |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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60 Size Sequence length or cluster size |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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61 %Id Identity to the seed(as a percentage), or * if this is a seed. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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62 Strand '+' plus strand, '-' minus strand, or '.' amino acids. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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63 Qlo 0-based coordinate of alignment start in the query sequence. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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64 Tlo 0-based coordinate of alignment start in target (seed) sequence. If minus strand, Tlo is relative to start of reverse-complement target. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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65 Alignment Compressed representation of alignment to the seed(see below), or '*' if a seed. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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66 Query FASTA label of query sequence |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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67 Target FASTA label of target(seed / library / database) sequence. or '*' if a seed. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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68 ========= =========================================== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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69 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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70 Record Types are: |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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71 ----------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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72 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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73 ====== =========================================== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
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74 Column Description |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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75 ------ ------------------------------------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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76 L Library seed(generated only if a match if found to this seed). |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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77 S New seed. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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78 H Hit, also known as an accept; i.e. a successful match. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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79 D Library cluster. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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80 C New cluster. |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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81 N Not matched (a sequence that didn't match library with --libonly specified). |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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82 R Reject (generated only if --output_rejects is specified) |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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83 ====== =========================================== |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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84 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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85 The alignment is compressed using run-length encoding, as follows. Each column in the alignment is classified as M,D or I: |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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86 -------------------------------------------------------------------------------------------------------------------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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87 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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88 ==== ====== ============== ============= |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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89 Code Name Query sequence Seed sequence |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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90 ---- ------ -------------- ------------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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91 M Match Letter Letter |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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92 D Delete Gap Letter |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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93 I Insert Letter Gap |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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94 ==== ====== ============== ============= |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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95 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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96 -------- |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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97 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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98 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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99 </help> |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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100 |
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e85e7ba38aff
"planemo upload for repository https://github.com/QFAB-Bioinformatics/metaDEGalaxy/tree/master/uc2otutable commit 0db3cb4e9a87400bb2f8402ffc23334e24ad4b4e-dirty"
qfabrepo
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101 </tool> |
