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comparison cut_fr.xml @ 1:59bd6cbbeb92 draft

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author r-lannes
date Wed, 16 Dec 2015 08:46:07 -0500
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0:93f267c26057 1:59bd6cbbeb92
1 <!-- <cut_fr.xml is script allwoing more convenient use of cut in galaxy environment>
2 Copyright (C) <2015> <Lannes Romain>
3
4 This program is free software: you can redistribute it and/or modify
5 it under the terms of the GNU General Public License as published by
6 the Free Software Foundation, either version 3 of the License, or
7 (at your option) any later version.
8
9 This program is distributed in the hope that it will be useful,
10 but WITHOUT ANY WARRANTY; without even the implied warranty of
11 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 GNU General Public License for more details.
13
14 You should have received a copy of the GNU General Public License
15 along with this program. If not, see <http://www.gnu.org/licenses/>.''' -->
16 <tool id="cut_fr" name="cut_francais" version="1.0">
17 <description> keep or remove selected column </description>
18 <command interpreter="python3"> cut_fr.py
19 --c $column
20 --i $datasets
21 --type_cut $choice
22 --extend_print $extend_print
23 --o $output
24
25 </command>
26 <inputs>
27 <param name = "column" type = "text" format = "txt" value = "c1" label = "column(s)" />
28 <param name = "datasets" type = "data" format = "txt" value = "a tsv file" label = "dataset" />
29 <param name = "choice" type = "select" display = "radio" label = "choose cut type :" >
30 <option value = "exclude" > Exclude </option>
31 <option value = "include" > Include </option>
32 </param>
33 <param name = "extend_print" type ="select" label = "extended print">
34 <option value = "False" > False </option>
35 <option value = "True" > True </option>
36 </param>
37 </inputs>
38
39 <outputs>
40 <data name = "output" label="${tool.name} on ${datasets.name}" format = "tabular"/>
41
42 </outputs>
43 <help>
44 <![CDATA[
45 return a datasets with only or less specified column
46
47 To select only selected column choose option Include.
48
49 To remove selected column choose option Exclude.
50
51 extended print add print in strdout like input paramter, command launch by the system.
52
53 ]]> </help>
54
55 </tool>