Mercurial > repos > rakesh4osdd > clsi_profile
comparison dump/clsi_profile.xml @ 0:62226cd1acb5 draft
"planemo upload for repository https://github.com/rakesh4osdd/clsi_profile/tree/master commit ae6f2bc197b28000c56f6368ad044b350bc34f6a"
| author | rakesh4osdd |
|---|---|
| date | Fri, 11 Jun 2021 12:36:25 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:62226cd1acb5 |
|---|---|
| 1 <tool id="clsi_profile" name="CLSI Profile" version="0.1.0" python_template_version="3.5"> | |
| 2 <description>MIC profile using CLSI MIC breakpoints</description> | |
| 3 | |
| 4 <command detect_errors="exit_code"><![CDATA[ | |
| 5 python '$__tool_directory__/clsi_profile.py' '$input1' '$input2' '$output1' | |
| 6 ]]></command> | |
| 7 <inputs> | |
| 8 <param type="data" name="input1" format="csv" /> | |
| 9 <param type="data" name="input2" format="csv" /> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data name="output1" format="csv" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input1" value="input.csv"/> | |
| 17 <param name="input2" value="clsi.csv"/> | |
| 18 <output name="output1" file="output.csv"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help><![CDATA[ | |
| 22 Examples Files: | |
| 23 **CLSI MIC breakpoint file example:** :: | |
| 24 | |
| 25 Antibiotics,Susceptible,Resistant,Intermediate | |
| 26 Amikacin,≤ 16,≥ 64,32 | |
| 27 Tobramycin,≤ 4,≥ 16,8 | |
| 28 Gentamicin,≤ 4,≥ 16,8 | |
| 29 | |
| 30 **AST MIC value file example:** :: | |
| 31 Strain name,Antibiotics,MIC | |
| 32 Strain1,Amikacin,≤ 16 | |
| 33 Strain2,Tobramycin,≤ 4 | |
| 34 Strain3,Gentamicin,≤ 4 | |
| 35 ]]></help> | |
| 36 </tool> |