Mercurial > repos > recetox > matchms

diff matchms_similarity.xml @ 2:67ed0d4f3724 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit b974ff354fa375975050026482e1b6ded8005682
author recetox
date Thu, 08 Sep 2022 14:48:21 +0000
parents f680068b7863
children 9f8532c99845
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--- a/matchms_similarity.xml	Fri Jul 22 16:48:21 2022 +0000
+++ b/matchms_similarity.xml	Thu Sep 08 14:48:21 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="matchms" name="matchMS similarity" version="@TOOL_VERSION@+galaxy0" python_template_version="3.8">
+<tool id="matchms" name="matchMS similarity" version="@TOOL_VERSION@+galaxy1" python_template_version="3.8">
     <description>calculate the similarity score and matched peaks</description>
 
     <macros>
@@ -131,8 +131,10 @@
         <test>
             <param name="references" value="similarity/recetox_gc-ei_ms_20201028.msp" ftype="msp"/>
             <param name="queries" value="similarity/fill2.msp" ftype="msp"/>
-            <param name="ri_filtering.is_true" value="TRUE" />
-            <param name="ri_filtering.tolerance" value="60.0" />
+            <conditional name="ri_filtering">
+                <param name="is_true" value="True"></param>
+                <param name="tolerance" value="60.0" />
+            </conditional>
             <param name="similarity_metric" value="CosineGreedy"/>
             <output name="similarity_scores" file="similarity/scores_test6_out.tsv" ftype="tsv"/>
             <output name="similarity_matches" file="similarity/matches_test6_out.tsv" ftype="tsv"/>