Mercurial > repos > recetox > matchms_filtering

comparison matchms_filtering.xml @ 22:00e66c401366 draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit 8db07edd3b0d2ff778036dec410027ad58365488
author recetox
date Mon, 15 Jul 2024 08:00:24 +0000
parents 86d265d2a334
children
comparison
equal deleted inserted replaced
21:07cac38cbd29 22:00e66c401366
1 <tool id="matchms_filtering" name="matchms filtering" version="@TOOL_VERSION@+galaxy1" profile="21.09"> 1 <tool id="matchms_filtering" name="matchms filtering" version="@TOOL_VERSION@+galaxy0" profile="21.09">
2 <description>filter and normalize mass spectrometry data</description> 2 <description>filter and normalize mass spectrometry data</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>help.xml</import> 6 <import>help.xml</import>
62 </configfiles> 62 </configfiles>
63 63
64 <inputs> 64 <inputs>
65 <param label="Spectra file" name="spectra" type="data" format="msp,mgf" help="Mass spectra file to be filtered." /> 65 <param label="Spectra file" name="spectra" type="data" format="msp,mgf" help="Mass spectra file to be filtered." />
66 <param name="normalise_intensities_is_true" label="Normalize intensities" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false" 66 <param name="normalise_intensities_is_true" label="Normalize intensities" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false"
67 help="Normalize intensities of peaks (and losses) to unit height."/> 67 help="Normalize intensities of peaks to unit height."/>
68 <param name="default_filters_is_true" label="Apply default filters" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false" 68 <param name="default_filters_is_true" label="Apply default filters" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false"
69 help="Collection of filters that are considered default and that do no require any (factory) arguments."/> 69 help="Collection of filters that are considered default and that do no require any (factory) arguments."/>
70 <param name="clean_metadata_is_true" label="Clean metadata" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false" 70 <param name="clean_metadata_is_true" label="Clean metadata" type="boolean" truevalue="TRUE" falsevalue="FALSE" checked="false"
71 help="Apply all adding and cleaning filters if possible, so that the spectra have canonical metadata." /> 71 help="Apply all adding and cleaning filters if possible, so that the spectra have canonical metadata." />
72 72