Mercurial > repos > recetox > matchms_formatter

comparison macros.xml @ 5:f9c4f477ae91 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit f7bab98744e338dcdbdc9cf6f9de287632c76ea2
author recetox
date Tue, 18 Oct 2022 13:22:56 +0000
parents 966b4134ad12
children e1ee139b279a
comparison
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4:966b4134ad12 5:f9c4f477ae91
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.17.0</token> 2 <token name="@TOOL_VERSION@">0.17.0</token>
3 3
4 <xml name="creator"> 4 <xml name="creator">
5 <creator> 5 <creator>
6 <yield/>
6 <person 7 <person
7 givenName="Helge" 8 givenName="Helge"
8 familyName="Hecht" 9 familyName="Hecht"
9 url="https://github.com/hechth" 10 url="https://github.com/hechth"
10 identifier="0000-0001-6744-996X" /> 11 identifier="0000-0001-6744-996X" />
42 43
43 Downstream Tools 44 Downstream Tools
44 The output is a JSON file containing serialized matchMS Scores object. The file can be processed by **matchMS output formatter**. 45 The output is a JSON file containing serialized matchMS Scores object. The file can be processed by **matchMS output formatter**.
45 ]]> 46 ]]>
46 </token> 47 </token>
48
49 <token name="@HELP_matchms_networking@">
50 <![CDATA[
51 Documentation
52 For documentation on the tool see https://github.com/matchms/matchms/blob/master/README.rst
53 and https://matchms.readthedocs.io/en/latest/.
54
55 **Upstream Tools**
47 56
57 matchMS similarity
58
59 **Downstream Tools**
60
61 The output is a network-graph file that can be visualized using graph visualization software (e.g., Cytoscape).
62 ]]>
63 </token>
64
48 <token name="@HELP_formatter@"> 65 <token name="@HELP_formatter@">
49 <![CDATA[ 66 <![CDATA[
50 Usage 67 Usage
51 This tool creates user friendly tables from the similarity scores produced by **matchMS similarity**. 68 This tool creates user friendly tables from the similarity scores produced by **matchMS similarity**.
52 The tool can be operated on two modes based on (i) thresholds or (ii) top k matches. 69 The tool can be operated on two modes based on (i) thresholds or (ii) top k matches.
64 +----------+-----------+---------+--------+ 81 +----------+-----------+---------+--------+
65 | ... | ... | ... | ... | 82 | ... | ... | ... | ... |
66 +----------+-----------+---------+--------+ 83 +----------+-----------+---------+--------+
67 ]]> 84 ]]>
68 </token> 85 </token>
86
87 <xml name="citations">
88 <citations>
89 <citation type="doi">10.5281/zenodo.7178586</citation>
90 <citation type="doi">10.21105/joss.02411</citation>
91 </citations>
92 </xml>
93
69 </macros> 94 </macros>