diff matchms_formatter.xml @ 32:604131c54f97 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit bd80a813fb2f01f22eed0c874f8911ce4d00762a
author recetox
date Mon, 30 Jun 2025 13:01:12 +0000
parents 8bd942dcf1ad
children
line wrap: on
line diff
--- a/matchms_formatter.xml	Thu Nov 14 15:08:43 2024 +0000
+++ b/matchms_formatter.xml	Mon Jun 30 13:01:12 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy0" profile="21.09">
+<tool id="matchms_formatter" name="matchms scores formatter" version="@TOOL_VERSION@+galaxy0" profile="23.0" license="MIT">
     <description>reformat scores object of matchms to long format table</description>
 
     <macros>
@@ -13,7 +13,6 @@
 
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">matchms</requirement>
-        <requirement type="package" version="1.1.4">pandas</requirement>
     </requirements>
 
     <command detect_errors="aggressive"><![CDATA[
@@ -50,20 +49,20 @@
         <param label="Key" name="key" type="text" value="compound_name" help="Name of the key to use. Default is 'compound_name'." />
     </inputs>
     <outputs>
-        <data label="${tool.name} on ${on_string}" name="output" format="tsv"/>
+        <data label="${tool.name} on ${on_string}" name="output" format="tabular"/>
     </outputs>
 
     <tests>
         <test>
             <param name="scores" value="formatter/fill2_trunc_scores_with_metadata_match.json" ftype="json"/>
             <param name="key" value="compound_name"/>
-            <output name="output" value="formatter/fill2_formatted.tsv" ftype="tsv"
+            <output name="output" value="formatter/fill2_formatted.tsv" ftype="tabular"
                 checksum="md5$4f0d83da381b8a403d807d26a9dd0f34"/>
         </test>
         <test>
             <param name="scores" value="similarity/scores_test4_out.json" ftype="json"/>
             <param name="key" value="compound_name"/>
-            <output name="output" file="formatter/test4_formatted.tsv" ftype="tsv"/>
+            <output name="output" file="formatter/test4_formatted.tsv" ftype="tabular"/>
         </test>
     </tests>