Mercurial > repos > recetox > mzml_validator

annotate test-data/mbr_truncated.mzml @ 1:ada284e51141 draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit b1cc1aebf796f170d93e3dd46ffcdefdc7b8018a
author recetox
date Thu, 12 Oct 2023 13:30:39 +0000
parents 9beb3a276ce3
children
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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1 <?xml version="1.0" encoding="utf-8"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.2_idx.xsd">
9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" id="2016_Jan_12_QE2_47" version="1.1.0">
9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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4 <cvList count="2">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" version="3.74.0" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
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6 <cv id="UO" fullName="Unit Ontology" version="12:10:2011" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"/>
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7 </cvList>
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8 <fileDescription>
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9 <fileContent>
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10 <cvParam cvRef="MS" accession="MS:1000579" name="MS1 spectrum" value=""/>
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11 <cvParam cvRef="MS" accession="MS:1000127" name="centroid spectrum" value=""/>
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12 <cvParam cvRef="MS" accession="MS:1000580" name="MSn spectrum" value=""/>
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13 </fileContent>
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14 <sourceFileList count="3">
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15 <sourceFile id="_x0032_016_Jan_12_QE2_47.raw" name="2016_Jan_12_QE2_47.raw" location="">
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16 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="6f65a1287b2d7522c5fb90a8a5304212b3568b67"/>
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17 <cvParam cvRef="MS" accession="MS:1000563" name="Thermo RAW format" value=""/>
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18 <cvParam cvRef="MS" accession="MS:1000768" name="Thermo nativeID format" value=""/>
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19 </sourceFile>
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20 <sourceFile id="_x0032_016_Jan_12_QE2_47.mzXML" name="2016_Jan_12_QE2_47.mzXML" location="file:///">
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21 <cvParam cvRef="MS" accession="MS:1000776" name="scan number only nativeID format" value=""/>
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22 <cvParam cvRef="MS" accession="MS:1000566" name="ISB mzXML format" value=""/>
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23 <cvParam cvRef="MS" accession="MS:1000569" name="SHA-1" value="d9c6278c1c6a8f8ca6c69133bacd00efc5f2e706"/>
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24 </sourceFile>
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25 <sourceFile id="_x0032_016_Jan_12_QE2_47.mzML" name="2016_Jan_12_QE2_47.mzML" location="file:////Users/kumar207/Documents/Projects/Pratik/script/../mzML">
9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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26 </sourceFile>
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27 </sourceFileList>
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28 </fileDescription>
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29 <softwareList count="4">
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30 <software id="Xcalibur_x0020_software" version="2.6-264001/2.6.0.2640">
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31 <cvParam cvRef="MS" accession="MS:1000532" name="Xcalibur" value=""/>
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32 </software>
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33 <software id="ReAdW_x0020_software" version="2015.1.0(build Jun 29 2015 14:09:50)">
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34 <cvParam cvRef="MS" accession="MS:1000541" name="ReAdW" value=""/>
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35 </software>
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36 <software id="pwiz_3.0.8990" version="3.0.8990">
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37 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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38 </software>
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39 <software id="pwiz_3.0.7680" version="3.0.7680">
9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
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40 <cvParam cvRef="MS" accession="MS:1000615" name="ProteoWizard software" value=""/>
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41 </software>
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42 </softwareList>
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43 <instrumentConfigurationList count="1">
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44 <instrumentConfiguration id="IC1">
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45 <userParam name="msManufacturer" value="Thermo Finnigan"/>
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46 <userParam name="msModel" value="unknown"/>
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47 <componentList count="3">
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48 <source order="1">
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49 <userParam name="msIonisation" value="NSI"/>
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50 </source>
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51 <analyzer order="1">
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52 <cvParam cvRef="MS" accession="MS:1000079" name="fourier transform ion cyclotron resonance mass spectrometer" value=""/>
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53 </analyzer>
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54 <detector order="1">
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55 <userParam name="msDetector" value="unknown"/>
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56 </detector>
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57 </componentList>
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58 <softwareRef ref="Xcalibur_x0020_software"/>
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59 </instrumentConfiguration>
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60 </instrumentConfigurationList>
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61 <dataProcessingList count="3">
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62 <dataProcessing id="dataProcessing">
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63 <processingMethod order="0">
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64 <cvParam cvRef="MS" accession="MS:1000035" name="peak picking" value=""/>
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65 </processingMethod>
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66 </dataProcessing>
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67 <dataProcessing id="ReAdW_x0020_software_x0020_processing">
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68 <processingMethod order="0" softwareRef="ReAdW_x0020_software">
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69 <userParam name="type" value="conversion"/>
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70 </processingMethod>
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71 </dataProcessing>
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72 <dataProcessing id="pwiz_Reader_conversion">
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73 <processingMethod order="0" softwareRef="pwiz_3.0.8990">
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74 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" value=""/>
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75 </processingMethod>
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76 </dataProcessing>
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77 </dataProcessingList>
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recetox
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recetox
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recetox
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recetox
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recetox
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recetox
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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recetox
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recetox
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recetox
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recetox
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recetox
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
parents:
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9beb3a276ce3 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mzml_validator commit d9676cbf7a1f8bd1cf0af742585893459d4861aa
recetox
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