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comparison ramclustr.xml @ 10:2d94da58904b draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit dc508ea3521991cd42ff6c1aa8aa845b36412771
author recetox
date Wed, 22 May 2024 08:04:21 +0000
parents d70dd1d6ac4d
children da7722f665f4
comparison
equal deleted inserted replaced
9:d70dd1d6ac4d 10:2d94da58904b
1 <tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy5" profile="21.09"> 1 <tool id="ramclustr" name="RAMClustR" version="@TOOL_VERSION@+galaxy6" profile="21.09">
2 <description>A feature clustering algorithm for non-targeted mass spectrometric metabolomics data.</description> 2 <description>A feature clustering algorithm for non-targeted mass spectrometric metabolomics data.</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro='annotation'/> 6 <expand macro='annotation'/>
54 ) 54 )
55 #else if $filetype.type_choice == "recetox-aplcms": 55 #else if $filetype.type_choice == "recetox-aplcms":
56 ramclustObj = read_ramclustr_aplcms( 56 ramclustObj = read_ramclustr_aplcms(
57 ms1_featuredefinitions = "$filetype.ms_dataframe.ms1_featureDefinitions", 57 ms1_featuredefinitions = "$filetype.ms_dataframe.ms1_featureDefinitions",
58 ms1_featurevalues = "$filetype.ms_dataframe.ms1_featureValues", 58 ms1_featurevalues = "$filetype.ms_dataframe.ms1_featureValues",
59 ms1_featuredefinitions_ext = "$filetype.ms_dataframe.ms1_featureDefinitions.ext",
60 ms1_featurevalues_ext = "$filetype.ms_dataframe.ms1_featureValues.ext",
59 #if $filetype.ms_dataframe.df_phenoData: 61 #if $filetype.ms_dataframe.df_phenoData:
60 df_phenodata = "$filetype.ms_dataframe.df_phenoData", 62 df_phenodata = "$filetype.ms_dataframe.df_phenoData",
61 phenodata_ext = "${filetype.ms_dataframe.df_phenoData.ext}", 63 phenodata_ext = "${filetype.ms_dataframe.df_phenoData.ext}",
62 #end if 64 #end if
63 #if $extras.ExpDes: 65 #if $extras.ExpDes: