Mercurial > repos > recetox > ramclustr
diff test-data/lc-ramclustr-define-experiment.csv @ 0:36104baf75da draft
"planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit 4d2ac914c951166e386a94d8ebb8cb1becfac122"
author | recetox |
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date | Tue, 22 Mar 2022 16:09:16 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/lc-ramclustr-define-experiment.csv Tue Mar 22 16:09:16 2022 +0000 @@ -0,0 +1,38 @@ +parameter,Value,Description +,, +Experimental Design,, +Experiment,experiment_lc,"Experiment name, no spaces." +Species,mus musculus,Genus species from which samples are derived. +Sample,serum,"Type of sample (e.g., serum, leaf)." +Contributer,recetox,Your or your PI's name. +platform,LC-MS,Either GC-MS or LC-MS. +,, +GC-MS,, +chrominst,fill,Model of LC/GC instrument. +msinst,fill,Model of MS instrument. +column,fill,Column description. +InletTemp,fill,Temperature of inlet. +TransferTemp,fill,Temperature of GC to MS transfer line. +mstype,fill,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)." +msmode,fill,Positive or negative ion mode. +ionization,fill,"Ionization (EI, AP, or CI)." +msscanrange,fill,Scan range used for acquisition. +scantime,fill,Time for each full scan spectrum (e.g. 0.2 seconds). +deriv,fill,"Derivitization (TMS, TBDMS, or None)." +MSlevs,fill,Number of levels of energy acquired - 1 typically. +,, +LC-MS,, +chrominst,UltiMateX 3000 BioRS System,Model of LC/GC instrument. +msinst,FSN04-10000,Model of MS instrument. +column,These columns enable analysis of ppm levels of amines without column priming,Column description. +solvA,H20,Solvent A composition. +solvB,CO2,Solvent B composition. +CE1,50,Collision energy of acquisition of MS data. +CE2,100,Collision energy of acquisition for MSe/idMSMS data (when applicable). +mstype,Q,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)." +msmode,negative,Positive or negative ion mode. +ionization,ESI,"Ionization (EI, AP, or CI)." +colgas,He,Gas used for collisional dissociation. +msscanrange,1000,Scan range used for acquisition. +conevol,12,Cone voltage used for acquisition. +MSlevs,1.0,Number of levels of energy acquired - 1 typically.