Mercurial > repos > recetox > ramclustr

diff ramclustr_wrapper.R @ 8:c043e1fd79d1 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit 4b8a43b863ff8a0ff1d5a08e516068853adf358d
author recetox
date Tue, 16 Apr 2024 11:30:05 +0000
parents 09cabbc3d12d
children 2d94da58904b
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line diff
--- a/ramclustr_wrapper.R	Thu Oct 12 13:30:54 2023 +0000
+++ b/ramclustr_wrapper.R	Tue Apr 16 11:30:05 2024 +0000
@@ -3,9 +3,9 @@
                          output_spec_abundance,
                          msp_file) {
   RAMClustR::write.msp(ramclustr_obj, one.file = output_merge_msp)
-  write.csv(ramclustr_obj$SpecAbund,
+  write.table(ramclustr_obj$SpecAbund,
     file = output_spec_abundance,
-    row.names = TRUE, quote = FALSE
+    row.names = TRUE, quote = FALSE, col.names = NA, sep = "\t"
   )
 
   if (!is.null(msp_file)) {