Mercurial > repos > recetox > ramclustr_define_experiment

annotate ramclustr_define_experiment_wrapper.py @ 1:2e012f4c062e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit 8714723083359049eb1a715a946851e07f8a3a20
author recetox
date Tue, 20 Sep 2022 14:44:32 +0000
parents 42c2a25ff197
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
1 import argparse
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
2 import csv
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
3 import sys
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
4
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
5
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
6 ARGUMENTS = {
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
7 "Experiment": {"help": "Experiment name, no spaces.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
8 "Species": {"help": "Genus species from which samples are derived.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
9 "Sample": {"help": "Type of sample (e.g., serum, leaf).", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
10 "Contributer": {"help": "Your or your PI's name.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
11 "platform": {"help": "Either GC-MS or LC-MS.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
12 "chrominst": {"help": "Model of LC/GC instrument.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
13 "msinst": {"help": "Model of MS instrument.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
14 "column": {"help": "Column description.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
15 "InletTemp": {"help": "Temperature of inlet.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
16 "TransferTemp": {"help": "Temperature of GC to MS transfer line.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
17 "mstype": {"help": "Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q).", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
18 "msmode": {"help": "Positive or negative ion mode.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
19 "ionization": {"help": "Ionization (EI, AP, or CI).", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
20 "msscanrange": {"help": "Scan range used for acquisition.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
21 "scantime": {"help": "Time for each full scan spectrum (e.g. 0.2 seconds).", "type": float},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
22 "deriv": {"help": "Derivitization (TMS, TBDMS, or None).", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
23 "MSlevs": {"help": "Number of levels of energy acquired - 1 typically.", "type": float},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
24 "solvA": {"help": "Solvent A composition.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
25 "solvB": {"help": "Solvent B composition.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
26 "CE1": {"help": "Collision energy of acquisition of MS data.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
27 "CE2": {"help": "Collision energy of acquisition for MSe/idMSMS data (when applicable).", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
28 "colgas": {"help": "Gas used for collisional dissociation.", "type": str},
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
29 "conevol": {"help": "Cone voltage used for acquisition.", "type": str}
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
30 }
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
31
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
32
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
33 def get_value(args, value, fill=True):
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
34 if fill:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
35 return args[value]
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
36 return "fill"
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
37
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
38
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
39 def write_gcms(csv_writer, args, fill=True):
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
40 csv_writer.writerow(["", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
41 csv_writer.writerow(["GC-MS", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
42
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
43 gcms = ["chrominst", "msinst", "column", "InletTemp", "TransferTemp", "mstype", "msmode", "ionization",
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
44 "msscanrange", "scantime", "deriv", "MSlevs"]
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
45 for arg in gcms:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
46 csv_writer.writerow([arg, get_value(args, arg, fill=fill), ARGUMENTS[arg]["help"]])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
47
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
48
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
49 def write_lcms(csv_writer, args, fill=True):
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
50 csv_writer.writerow(["", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
51 csv_writer.writerow(["LC-MS", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
52
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
53 lcms = ["chrominst", "msinst", "column", "solvA", "solvB", "CE1", "CE2", "mstype", "msmode", "ionization", "colgas",
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
54 "msscanrange", "conevol", "MSlevs"]
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
55 for arg in lcms:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
56 csv_writer.writerow([arg, get_value(args, arg, fill=fill), ARGUMENTS[arg]["help"]])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
57
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
58
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
59 def main(argv):
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
60 parser = argparse.ArgumentParser(description="RAMClustR define experiment.")
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
61
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
62 for arg in ARGUMENTS.keys():
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
63 parser.add_argument(f"--{arg}", type=ARGUMENTS[arg]["type"], help=ARGUMENTS[arg]["help"])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
64
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
65 parser.add_argument("--output_file", type=str, help="Path to output csv file.")
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
66 args = vars(parser.parse_args())
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
67
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
68 with open(args["output_file"], "w") as csvfile:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
69 csv_writer = csv.writer(csvfile, delimiter=',')
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
70
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
71 csv_writer.writerow(["parameter", "Value", "Description"])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
72 csv_writer.writerow(["", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
73 csv_writer.writerow(["Experimental Design", "", ""])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
74
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
75 general = ["Experiment", "Species", "Sample", "Contributer", "platform"]
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
76 for arg in general:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
77 csv_writer.writerow([arg, args[arg], ARGUMENTS[arg]["help"]])
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
78
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
79 if args["platform"] == "GC-MS":
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
80 write_gcms(csv_writer, args)
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
81 write_lcms(csv_writer, args, fill=False)
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
82 elif args["platform"] == "LC-MS":
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
83 write_gcms(csv_writer, args, fill=False)
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
84 write_lcms(csv_writer, args)
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
85 else:
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
86 raise ValueError("Platform value incorrect, choose either GC-MS or LC-MS.")
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
87
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
88
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
89 if __name__ == "__main__":
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
parents:
diff changeset
90 main(argv=sys.argv[1:])