Mercurial > repos > recetox > ramclustr_define_experiment

annotate test-data/gc-ramclustr-define-experiment.csv @ 9:f2c1d0bbb074 draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit bc3445f7c41271b0062c7674108f57708d08dd28
author recetox
date Thu, 30 May 2024 14:52:18 +0000
parents 42c2a25ff197
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42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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diff changeset
1 parameter,Value,Description
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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2 ,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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3 Experimental Design,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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4 Experiment,experiment_gc,"Experiment name, no spaces."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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5 Species,mus musculus,Genus species from which samples are derived.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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6 Sample,serum,"Type of sample (e.g., serum, leaf)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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7 Contributer,recetox,Your or your PI's name.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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8 platform,GC-MS,Either GC-MS or LC-MS.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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diff changeset
9 ,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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10 GC-MS,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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11 chrominst,ISQ 7000,Model of LC/GC instrument.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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12 msinst,ISQ7K-VPI,Model of MS instrument.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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13 column,These columns enable analysis of ppm levels of amines without column priming,Column description.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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14 InletTemp,33,Temperature of inlet.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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15 TransferTemp,23,Temperature of GC to MS transfer line.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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16 mstype,QTOF,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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17 msmode,positive,Positive or negative ion mode.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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18 ionization,AP,"Ionization (EI, AP, or CI)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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19 msscanrange,100,Scan range used for acquisition.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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20 scantime,0.2,Time for each full scan spectrum (e.g. 0.2 seconds).
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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21 deriv,TMS,"Derivitization (TMS, TBDMS, or None)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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22 MSlevs,1.0,Number of levels of energy acquired - 1 typically.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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23 ,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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24 LC-MS,,
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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25 chrominst,fill,Model of LC/GC instrument.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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26 msinst,fill,Model of MS instrument.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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27 column,fill,Column description.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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28 solvA,fill,Solvent A composition.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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29 solvB,fill,Solvent B composition.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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30 CE1,fill,Collision energy of acquisition of MS data.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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31 CE2,fill,Collision energy of acquisition for MSe/idMSMS data (when applicable).
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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32 mstype,fill,"Type of mass spectrometer (one of QQQ, TOF, QTOF, Orbi, Q)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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33 msmode,fill,Positive or negative ion mode.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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34 ionization,fill,"Ionization (EI, AP, or CI)."
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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35 colgas,fill,Gas used for collisional dissociation.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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36 msscanrange,fill,Scan range used for acquisition.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
recetox
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37 conevol,fill,Cone voltage used for acquisition.
42c2a25ff197 planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/ramclustr commit c321421a07bfdcc9ed423e9ed2ee794157984ba1
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38 MSlevs,fill,Number of levels of energy acquired - 1 typically.