Mercurial > repos > recetox > recetox_aplcms_correct_time
view mzml_id_getter.py @ 11:501a232f3cd5 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 53ba7e6bfd6fc9034fcc9dfa5d52c698facb406c
author | recetox |
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date | Mon, 21 Oct 2024 13:18:06 +0000 |
parents | 4d7db9cdd952 |
children |
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#!/usr/bin/env python import argparse import sys from pymzml.run import Reader def main(argv): parser = argparse.ArgumentParser(description='Get run ID from an mzML file.') parser.add_argument('mzml_file', help='Path to an mzML file to get run ID from.') args = parser.parse_args() mzml = Reader(args.mzml_file) id = mzml.info['run_id'] if id is not None: with open("sample_name.txt", mode='x') as f: f.write(id) if __name__ == '__main__': main(sys.argv[1:])