Mercurial > repos > recetox > recetox_aplcms_recover_weaker_signals
comparison help.xml @ 4:755ff0afaaff draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 724ecb1b81ebd8a67488b8a9397177b2ff0357db
author | recetox |
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date | Wed, 24 May 2023 14:50:25 +0000 |
parents | 472dc85ce7c5 |
children | e0536ff73f36 |
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3:c69a12bfc2fb | 4:755ff0afaaff |
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108 <token name="@COMPUTE_CLUSTERS_HELP@"> | 108 <token name="@COMPUTE_CLUSTERS_HELP@"> |
109 recetox-aplcms - compute clusters | 109 recetox-aplcms - compute clusters |
110 ================================= | 110 ================================= |
111 | 111 |
112 Group features with `mz` and `rt` using tolerances within the tolerance into clusters, creating larger features from raw data points. | 112 Group features with `mz` and `rt` using tolerances within the tolerance into clusters, creating larger features from raw data points. |
113 Custom tolerances for `mz` and `rt` are computed based on the given parameters. | |
114 The tool takes a collection of all detected features and computes the clusters over a global feature table, adding the `sample_id` and `cluster` columns to the table. | 113 The tool takes a collection of all detected features and computes the clusters over a global feature table, adding the `sample_id` and `cluster` columns to the table. |
115 | 114 |
116 Example Output | 115 Example Output |
117 -------------- | 116 -------------- |
118 | 117 |
131 | 130 |
132 <token name="@CORRECT_TIME_HELP@"> | 131 <token name="@CORRECT_TIME_HELP@"> |
133 recetox-aplcms - correct time | 132 recetox-aplcms - correct time |
134 ============================= | 133 ============================= |
135 | 134 |
136 Apply spline-based retention time correction to a feature table given the template table and the computed `mz` and `rt` tolerances. | 135 Apply spline-based retention time correction to a feature table given the template table and the `mz` and `rt` tolerances. |
137 | 136 |
138 Example Output | 137 Example Output |
139 -------------- | 138 -------------- |
140 The output has the same format as `compute clusters` but the retention time values are corrected based on the template table. | 139 The output has the same format as `compute clusters` but the retention time values are corrected based on the template table. |
141 | 140 |