Mercurial > repos > recetox > recetox_aplcms_recover_weaker_signals

comparison macros.xml @ 9:a9bb2ccc53de draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 97249a1af94ac5c387e1ede274dec5364f71cde9
author recetox
date Wed, 11 Oct 2023 11:18:27 +0000
parents 99d118321d5f
children
comparison
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8:99d118321d5f 9:a9bb2ccc53de
11 <edam_topics> 11 <edam_topics>
12 <edam_topic>topic_3172</edam_topic> 12 <edam_topic>topic_3172</edam_topic>
13 <edam_topic>topic_0091</edam_topic> 13 <edam_topic>topic_0091</edam_topic>
14 <edam_topic>topic_3520</edam_topic> 14 <edam_topic>topic_3520</edam_topic>
15 </edam_topics> 15 </edam_topics>
16 </xml>
17
18 <xml name="refs">
16 <xrefs> 19 <xrefs>
17 <xref type="bio.tools">recetox-aplcms</xref> 20 <xref type="bio.tools">recetox-aplcms</xref>
18 </xrefs> 21 </xrefs>
19 </xml> 22 </xml>
20 23
79 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> 82 help="The lower limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." />
80 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio" 83 <param name="sigma_ratio_lim_max" type="float" optional="true" label="Maximal sigma ratio"
81 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." /> 84 help="The upper limit of the ratio range between the left-standard deviation and the right-standard deviation of the bi-Gaussian function to fit the data." />
82 </section> 85 </section>
83 <conditional name="sd_cut"> 86 <conditional name="sd_cut">
84 <param name="sd_cut_bounds" type="boolean" checked="true" truevalue="TRUE" falsevalue="FALSE" label="Standard deviations boundaries." 87 <param name="sd_cut_bounds" type="select" label="Standard deviations boundaries."
85 help="Limit the standard deviations by setting boundaries." /> 88 help="Limit the standard deviations by setting boundaries.">
89 <option value="FALSE">FALSE</option>
90 <option value="TRUE" selected="true">TRUE</option>
91 </param>
86 <when value="TRUE"> 92 <when value="TRUE">
87 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation" 93 <param name="sd_cut_min" type="float" value="0.01" label="Minimal standard deviation"
88 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." /> 94 help="The minimum standard deviation - features with a standard deviation lower than this number are eliminated." />
89 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation" 95 <param name="sd_cut_max" type="float" value="500" label="Maximal standard deviation"
90 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." /> 96 help="The maximum standard deviation - features with a standard deviation greater than this number are eliminated." />
91 </when> 97 </when>
98 <when value="FALSE"></when>
92 </conditional> 99 </conditional>
93 <conditional name="peak_estim"> 100 <conditional name="peak_estim">
94 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method" 101 <param name="peak_estim_method" type="select" display="radio" label="Peak estimation method"
95 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization)."> 102 help="The estimation method for parameters of the bi-Gaussian peak model. Two possible algorithms: moment and EM (expectation maximization).">
96 <option value="moment">Moment</option> 103 <option value="moment">Moment</option>
98 </param> 105 </param>
99 <when value="moment"> 106 <when value="moment">
100 <param name="moment_power" type="float" value="1" label="Moment power" 107 <param name="moment_power" type="float" value="1" label="Moment power"
101 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." /> 108 help="The power parameter for data transformation when fitting the bi-Gaussian mixture model in an EIC." />
102 </when> 109 </when>
110 <when value="EM"></when>
103 </conditional> 111 </conditional>
104 </section> 112 </section>
105 </xml> 113 </xml>
106 114
107 <xml name="tolerances"> 115 <xml name="tolerances">